Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00819 ATGATGTTGGATCTCAACGATTCGATTACGAACCGTGACGAAACGACGGCAAATCGGATCGTAATGGAAGATTCAGAGACTTCAAATTCCTCCGTCGTTAATGCCGCCGACGAGGTTTCCAATAGCAGAGACGAAGATTCTTCTGTTTTAATCTTCGATATTCTTAAAAGGGAAAAATCTGGCGGCGGCGGTGGCGGCGCGTCGCCGGAATTGGTGACTCAGACGCTTTTTCCGGTGGTCGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCCACAGCCGATTCCGGTGGCGGCGGCGGACCGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGTTCCCGGAGCTCGCAGTACCGGGGAGTAACCTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCACGCTGCAGCACGGGCTTATGATCGAGCTGCAATAAAGTTTAGGGGAGTCGATGCAGACATAAACTTCAATATAACTGATTACGACGAAGATATGAAACATATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGCGGAGGATCGAAGCTACGAGGATTGTCTCTTCAAAAATATGGAAAATGGGAAAATCAAATGAGCCAAATCATTGGGAAGAATATTTTGGCTTATGTTTGTTTGAGAAAAGTTGGAATTGAGCAGAGGTCTTACAAAGGGGAGACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTCGTAATTCTTCTCAAAAGCTCAATATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGGGAGAGAAAAGAGAAACAACGACTCGACGAAGAGTCCTACGAGTTGGGGATGGCAAATGTCAACGCCAACGCCGATGTCGATGCCGATAACAATGCCAATTCAAGGAAATATGAGTGGAAAAAGCAATTACAATAATGCTAATAATAATGTGATTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCTTCTTCTTCTAATTTTGGTTCACTTTATGCTCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1341 45.04 MMLDLNDSITNRDETTANRIVMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKREKSGGGGGGASPELVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGPPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNITDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGKWENQMSQIIGKNILAYVCLRKVGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFRNSSQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFLADNEERGREKRNNDSTKSPTSWGWQMSTPTPMSMPITMPIQGNMSGKSNYNNANNNVISNGIIAREEAHVSKIAASSGFSSSSSNFGSLYAQNNTALHSTHCPNIS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7812200 7816756 - Lsi04G008190.1 Lsi04g00819 660868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00819 446 CDD AP2 136 194 IPR001471 GO:0003700|GO:0006355
Lsi04g00819 446 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 432 - -
Lsi04g00819 446 MobiDBLite consensus disorder prediction 344 368 - -
Lsi04g00819 446 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Lsi04g00819 446 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Lsi04g00819 446 Gene3D AP2/ERF domain 135 194 IPR036955 GO:0003700|GO:0006355
Lsi04g00819 446 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Lsi04g00819 446 MobiDBLite consensus disorder prediction 91 113 - -
Lsi04g00819 446 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 2 432 - -
Lsi04g00819 446 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00819 Lsi-Chr4:7812200 Lsi10g00523 Lsi-Chr10:7461585 1.82E-10 dispersed
Lsi01g01365 Lsi-Chr1:11841693 Lsi04g00819 Lsi-Chr4:7812200 3.50E-11 wgd
Lsi10g01313 Lsi-Chr10:17329232 Lsi04g00819 Lsi-Chr4:7812200 2.57E-67 wgd
Lsi03g02059 Lsi-Chr3:31912674 Lsi04g00819 Lsi-Chr4:7812200 8.96E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25159 PF00847 AP2 6.20E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00819 K09284 - csv:101204131 692.189