Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00826 ATGGGAGAAAAATTGATGGTAAAGCCGACATTTAATGGGAAGAACGAGGTGAAAGATGGAGGTTCTGATCAAATTGCAGGACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCGGACTGTCTTTTGGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATTTACATGGTTTGCATTTACCACGTTGTCCATTATCTTCATTTTTTAATCTCCCACCCGATAAAAAACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTGGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGCTATCCGATTTTGGCTTGGCAAAATTAGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACATATGGATACTGTGCTCCTGAGTATGCAATGACAGGCCAACTCACTTTAAAATCAGACGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGATAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCTGATCCATTGCTCCATGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTTGTCACAGCCCTTACATATCTTGCCTCCCAAAAATACGACCCCGAAACCCAGCCAGTTCAAAGCGCTCGCAGTAGCTCGTCCACACCTAGATCTTCTAGAAGAGAACGGACTTACACGTTCGAAGTTAGAACCAAACGGAAGTTTACTGTAATTTGCTTTCTTCTTCCTCGCTCTGCTCCGCCTGTCGCCGCCCTAAAATCGCGAACCATCATGGACCGAAGGACTTCGAACTTGCTTGATGAAGCTATAGGTTTTGATGATCCCACTAACCCCTCCCCTCTGATCGGCCGTCTGTTGCTCGTCGAGGATTGCGTTGAAACAAGCGGTGCTTTTGTTCTTCATCACCTCCTCAAGCGCGCCTTTTCTTCTCCGCACTCTTCCAATGCCGTCATCTTCATTGCATTCTCTCAGTCTTTCCTCCACTACGACCGTGTGCTCAGGAAACTGAATGAGATGTATTCATTTGCAGAACTATGTCTTAATCAGGGGTGTAACTTAGCTGCTCAAAGGGATAGCGGTAGGTTCGTTTTCTTTGACATGCTTACGCTGGGCTGTTCAGGGGTGGCCCATGAGCATATAGGAGAGGAAGTCGTGAATGTTGAGAGGCTATGTAGTGTGCCAACTAAACGCTTCCAAAATCGAGGACCAGAAGGGCCCAACAAAGGAACAAATAGAAGTGGAAAGGAAACGGGTGAAGGTGTTCTTGTTGGGCTGTACTGCAAAATTCAGAGAGCTGTTAATGCTTTAATTCAAGAGAACAAAAGGCATGTCACCATTGTGATTGATGATATACCTCTTTTGGAGGTTGCTGCCAATGGTTCTTCAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTGTTCCATAATTGCACTTAATCACGAGGATGTTTACGTGGACATCGAAAGGCCACTGATTCTACAGATGGAATACCTTGCTGACGTTTTGATAAAAGTAGGACCACTAGCCACTGGTATAGCAAAGGATGTTCATGGGCAGGCTCTCTCGACCCCACTTTCATTAATTCTTTCCCCAACTGTGCCTGATCTGACAGTTTTGAACAAGCCAGTTGAAGGACTGCAAGACAAGTTAAGAAACAAAGTGCATAATTTTCACTTTTACATCAAGGAAAACGAGCTTGAGGATAGTAATTGGGCAAGGAAAGTAGACGGACTTGTTTGA 2184 43.68 MGEKLMVKPTFNGKNEVKDGGSDQIAGQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHGLHLPRCPLSSFFNLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLHGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKYDPETQPVQSARSSSSTPRSSRRERTYTFEVRTKRKFTVICFLLPRSAPPVAALKSRTIMDRRTSNLLDEAIGFDDPTNPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSPHSSNAVIFIAFSQSFLHYDRVLRKLNEMYSFAELCLNQGCNLAAQRDSGRFVFFDMLTLGCSGVAHEHIGEEVVNVERLCSVPTKRFQNRGPEGPNKGTNRSGKETGEGVLVGLYCKIQRAVNALIQENKRHVTIVIDDIPLLEVAANGSSNHVLDFLHYCHTLTSEIGCSIIALNHEDVYVDIERPLILQMEYLADVLIKVGPLATGIAKDVHGQALSTPLSLILSPTVPDLTVLNKPVEGLQDKLRNKVHNFHFYIKENELEDSNWARKVDGLV 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7949316 7960604 - Lsi04G008260.1 Lsi04g00826 660875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00826 727 MobiDBLite consensus disorder prediction 342 364 - -
Lsi04g00826 727 CDD STKc_IRAK 50 332 - -
Lsi04g00826 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lsi04g00826 727 Gene3D Transferase(Phosphotransferase) domain 1 121 355 - -
Lsi04g00826 727 ProSiteProfiles Protein kinase domain profile. 44 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00826 727 Gene3D Phosphorylase Kinase; domain 1 15 120 - -
Lsi04g00826 727 SMART serkin_6 44 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00826 727 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lsi04g00826 727 MobiDBLite consensus disorder prediction 342 360 - -
Lsi04g00826 727 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 17 372 - -
Lsi04g00826 727 Gene3D - 416 669 IPR027417 -
Lsi04g00826 727 SUPERFAMILY Protein kinase-like (PK-like) 32 361 IPR011009 -
Lsi04g00826 727 Pfam Protein tyrosine and serine/threonine kinase 49 275 IPR001245 GO:0004672|GO:0006468
Lsi04g00826 727 PANTHER OS07G0668900 PROTEIN 17 372 - -
Lsi04g00826 727 Pfam Elongation complex protein 6 560 667 IPR018627 GO:0002098|GO:0033588
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00826 Lsi-Chr4:7949316 Lsi09g01752 Lsi-Chr9:26197883 0 dispersed
Lsi04g00826 Lsi-Chr4:7949316 Lsi04g00833 Lsi-Chr4:8032347 1.68E-40 proximal
Lsi02g01913 Lsi-Chr2:25045516 Lsi04g00826 Lsi-Chr4:7949316 7.36E-90 transposed
Lsi05g00612 Lsi-Chr5:7554669 Lsi04g00826 Lsi-Chr4:7949316 7.71E-145 transposed
Lsi05g01512 Lsi-Chr5:22909461 Lsi04g00826 Lsi-Chr4:7949316 0 transposed
Lsi10g01319 Lsi-Chr10:17398309 Lsi04g00826 Lsi-Chr4:7949316 9.98E-149 wgd
Lsi03g02064 Lsi-Chr3:31958333 Lsi04g00826 Lsi-Chr4:7949316 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83571 PF07714 PK_Tyr_Ser-Thr 6.40E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00826 - - csv:101221705 665.225