Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00830 ATGGTATCTGAAACTTTGATGAAAATTGTATCACCTTGCTGGAAGCCCTTGGTTGAAGGCGAAAATTCCAGCAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGGCCACTGAGCTCATTTGAATCAGGTCCTGTTGGAACGTTTGTTGGAATTTATGATGGCCACGGAGGACCAGAAGCTGCAGAATTCATAAATGATCGTCTTTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAACCGGGGAGTATCTGCTGAAATTATTAACAAAGCATTTTTGGAGACGGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATGAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATCGTGGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGTGTTATACAGGTCTCGAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCGAGAGCCTCTTTTGCCAAAGTTCAGATTACCAGAACCATTCCACAAGCCAATACTCAAAGCCGAACCTGCTATTGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTTGACATCGTACATAGTTGTCCACGTAACGGGGTTGCTAGGAAACTCGTTAAAGCAGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATTGATCGCGGGGTAAGAAGGCATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTTGATTCGCATCTGATTAGTCGCAGTCCAAGCTACGGACCTATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1170 42.82 MVSETLMKIVSPCWKPLVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLMKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8009578 8014976 - Lsi04G008300.1 Lsi04g00830 660879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00830 389 Gene3D - 39 370 IPR036457 -
Lsi04g00830 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Lsi04g00830 389 Pfam Protein phosphatase 2C 82 331 IPR001932 -
Lsi04g00830 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Lsi04g00830 389 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 384 - -
Lsi04g00830 389 SMART PP2C_4 41 360 IPR001932 -
Lsi04g00830 389 CDD PP2Cc 50 362 IPR001932 -
Lsi04g00830 389 PANTHER ALPHABET, ISOFORM E-RELATED 8 384 - -
Lsi04g00830 389 SUPERFAMILY PP2C-like 58 363 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00830 Lsi-Chr4:8009578 Lsi10g00506 Lsi-Chr10:7237062 0 dispersed
Lsi03g02069 Lsi-Chr3:32001668 Lsi04g00830 Lsi-Chr4:8009578 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00830 K01102 - csv:101220760 757.288