Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00839 | ATGAGAGCTTCAAATACCCATTTTCTTATCTGGATTCTGTGTGCTTTGTGTTTGTCATCATCTCTCTCATCAGAATTCACTCCTGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAATACAGTGGGAGGTCGACTATTTCTATCTGATGATTCCAACCCAAATGGGAAGTCTCTTTCCACTACAAGCAATGTATCTAGTTCATCCTCATCAGACTTGTTCTCACCTCTATTTAGAACTGCAAAAGTATTTGAAACAGCTTCCCAATACAACTTCAAAATTAGGAAACAGGGTAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTCTGGGAACTTCAACTTGAGTTTAGCCAGATTCTCTGTTTCTGCTCAAAATATCACCCTTCTCAAAGAGTTTCAAATCGACAGTGGCTCGGTAATGAAGGAATATTCTCTGAATGTCACTTCCAATACTCTTGTTCTTACATTTACTCCGATGGTGAATTCAACTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTGATGAATTGATTCCCTTGACTATCACCAGTGTTGAGAAGGTTGAAATTAGTTTGGGGAACAGGGTATTGGAGACAGTTTTTAGAGTGAATATGGGCAATCAAACCGTGTCTCCGAAGGACGATATTCTCTCACGCGGTTGGATTGCAGATGGTCCATTCTTGGTGCATAATAATCAGGCTGTTGTTGGAAAGTTTGTGTCAAATCTCACAAAAGTGAATATGACAAGAGGTTCTGAAATTATGGCTCCTCGTTCTGTGTATGGAACGGCAACTCGGTTAGGAGCTGATGTGGATATTAATGCTAATGCCAATGTATCGTGGTCATTCAATGTTGATCCAGGGTATGAATATATGATTCGTTATCATTTCTGTGATATTATTGATCTTTCTCTTGGATCAATGTTCTTCAATGTTTATGCCAACTCATGGAAGGTTAAAGATCATCTTGATCTTGGTAATCTCACTTCACATATCCCAGGTGCACCCTATGTCCTGGACACTATAGCCAGTCCAATTGACAGCTCTAAGTTCAAAATAAGTGTTGGCCCTTCCAATCTTCATGAATACTCGGCTGCCATTCTTAACGGGCTCGAGATCATGAAAATAAGTGATACCTTTGGTTTACACTCAAAGAAAGGTTCCAATGTGAAAGTTGGTCTTATAGCAGGCTTGGTAGCTGGACTGCTTGTTCTTGCTGTTTTGGCCACTCTTGTCATTGTACTGTGCAGAAGAAGAAGGAGATCGGCGCTTGTTCGTCACTTGAAGGAAGTGGAAAATTTTGGTGTGAATGGTAGAGAAAGCAACTATATCATTGGATCTGTGGCCTTTTCGAGCTCAAAAATCGGTTATCGATATCCTCTTGCAGCTATACAGGAAGCTACAGATCATTTTAGTGAAAGTTTAGTCATTGGCCTTGGTGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAACACAGAAGTGGCAGTGAAAAGAGGGACTTCTAAATCCCAGCAGGGTCTTGCAGAGTTTCGAACTGAAATCGAAATGTTATCCCAGTTTCGCCACCGTCATTTAGTATCTCTGATCGGGTACTGCGACGAGCAAAATGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATTTGCATTGGCTCAGCTAGAGGACTTCACTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTTGATCAAAACTACATGGCCAAAGTTGCAGACTTTGGACTCTCGAAGATTGGCCCCGAATTTGACAAGACTCATGTCAGTACAGCAGTGAAAGGAAGCTTCGGCTATCTCGATCCCGAATATTTAACAACGCAGCAACTGACCGAGAAATCAGACGTGTACTCTTTTGGGGTGGTTATGTTTGAAGTCCTTTGCGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAGGTGAATTTAATTGAATGGGTAATGAGGAGGAAGGACAGAGATCAACTGGAGGCGATTGTAGACGCTCGCATTCTCGAGCAAATCAAACTAGAATCTCTGAAAAAATATGTAGAGACGGCCGAAAAATGCTTGGCAGAATGCGGCATGGATCGTCCCATGATGGGAAACGTTCTGTGGAATCTGGAGTGTGCACTCCAACTCCAAGGGGATGAAAAATCTCGTCGTGGAAAGGAATCATCCTCACAAGCTGATCTTTCCAACCACTGGGAGGCAAGCGTATCGACGACTCAATTCAGCACAGGAAGCGCAGTCGATATTGCCGGTATTTCAATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG | 2430 | 42.1 | MRASNTHFLIWILCALCLSSSLSSEFTPDDNFLIDCGSSSNNTVGGRLFLSDDSNPNGKSLSTTSNVSSSSSSDLFSPLFRTAKVFETASQYNFKIRKQGRHWIRLYFYPFVSGNFNLSLARFSVSAQNITLLKEFQIDSGSVMKEYSLNVTSNTLVLTFTPMVNSTAFINALEVVSVPDELIPLTITSVEKVEISLGNRVLETVFRVNMGNQTVSPKDDILSRGWIADGPFLVHNNQAVVGKFVSNLTKVNMTRGSEIMAPRSVYGTATRLGADVDINANANVSWSFNVDPGYEYMIRYHFCDIIDLSLGSMFFNVYANSWKVKDHLDLGNLTSHIPGAPYVLDTIASPIDSSKFKISVGPSNLHEYSAAILNGLEIMKISDTFGLHSKKGSNVKVGLIAGLVAGLLVLAVLATLVIVLCRRRRRSALVRHLKEVENFGVNGRESNYIIGSVAFSSSKIGYRYPLAAIQEATDHFSESLVIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLDICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMRRKDRDQLEAIVDARILEQIKLESLKKYVETAEKCLAECGMDRPMMGNVLWNLECALQLQGDEKSRRGKESSSQADLSNHWEASVSTTQFSTGSAVDIAGISMSKVFAQMVREDMR | 809 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8091470 | 8093899 | - | Lsi04G008390.1 | Lsi04g00839 | 660888 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00839 | 809 | Gene3D | - | 201 | 382 | - | - | |
Lsi04g00839 | 809 | Gene3D | - | 31 | 178 | - | - | |
Lsi04g00839 | 809 | SUPERFAMILY | Protein kinase-like (PK-like) | 458 | 746 | IPR011009 | - | |
Lsi04g00839 | 809 | CDD | STKc_IRAK | 482 | 747 | - | - | |
Lsi04g00839 | 809 | PANTHER | RECEPTOR-LIKE PROTEIN KINASE HERK 1 | 17 | 801 | - | - | |
Lsi04g00839 | 809 | Gene3D | Phosphorylase Kinase; domain 1 | 444 | 551 | - | - | |
Lsi04g00839 | 809 | PANTHER | OS07G0166700 PROTEIN | 17 | 801 | IPR045272 | GO:0004714|GO:0006468 | |
Lsi04g00839 | 809 | ProSitePatterns | Protein kinases ATP-binding region signature. | 482 | 504 | IPR017441 | GO:0005524 | |
Lsi04g00839 | 809 | Pfam | Protein tyrosine and serine/threonine kinase | 481 | 692 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi04g00839 | 809 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 596 | 608 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi04g00839 | 809 | SMART | serkin_6 | 476 | 749 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi04g00839 | 809 | Pfam | Malectin-like domain | 34 | 381 | IPR024788 | - | |
Lsi04g00839 | 809 | Gene3D | Transferase(Phosphotransferase) domain 1 | 552 | 774 | - | - | |
Lsi04g00839 | 809 | ProSiteProfiles | Protein kinase domain profile. | 476 | 750 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00839 | Lsi-Chr4:8091470 | Lsi04g01289 | Lsi-Chr4:20305282 | 0 | dispersed | |
Lsi01g00566 | Lsi-Chr1:4531889 | Lsi04g00839 | Lsi-Chr4:8091470 | 7.55E-43 | transposed | |
Lsi09g00834 | Lsi-Chr9:9576550 | Lsi04g00839 | Lsi-Chr4:8091470 | 2.12E-58 | transposed | |
Lsi10g00794 | Lsi-Chr10:10747100 | Lsi04g00839 | Lsi-Chr4:8091470 | 2.00E-69 | transposed | |
Lsi10g01334 | Lsi-Chr10:17550759 | Lsi04g00839 | Lsi-Chr4:8091470 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83572 | PF12819 | Malectin_like | 4.40E-32 | CL0202 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00839 | - | - | csv:101203398 | 1319.68 |