Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00839 ATGAGAGCTTCAAATACCCATTTTCTTATCTGGATTCTGTGTGCTTTGTGTTTGTCATCATCTCTCTCATCAGAATTCACTCCTGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAATACAGTGGGAGGTCGACTATTTCTATCTGATGATTCCAACCCAAATGGGAAGTCTCTTTCCACTACAAGCAATGTATCTAGTTCATCCTCATCAGACTTGTTCTCACCTCTATTTAGAACTGCAAAAGTATTTGAAACAGCTTCCCAATACAACTTCAAAATTAGGAAACAGGGTAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTCTGGGAACTTCAACTTGAGTTTAGCCAGATTCTCTGTTTCTGCTCAAAATATCACCCTTCTCAAAGAGTTTCAAATCGACAGTGGCTCGGTAATGAAGGAATATTCTCTGAATGTCACTTCCAATACTCTTGTTCTTACATTTACTCCGATGGTGAATTCAACTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTGATGAATTGATTCCCTTGACTATCACCAGTGTTGAGAAGGTTGAAATTAGTTTGGGGAACAGGGTATTGGAGACAGTTTTTAGAGTGAATATGGGCAATCAAACCGTGTCTCCGAAGGACGATATTCTCTCACGCGGTTGGATTGCAGATGGTCCATTCTTGGTGCATAATAATCAGGCTGTTGTTGGAAAGTTTGTGTCAAATCTCACAAAAGTGAATATGACAAGAGGTTCTGAAATTATGGCTCCTCGTTCTGTGTATGGAACGGCAACTCGGTTAGGAGCTGATGTGGATATTAATGCTAATGCCAATGTATCGTGGTCATTCAATGTTGATCCAGGGTATGAATATATGATTCGTTATCATTTCTGTGATATTATTGATCTTTCTCTTGGATCAATGTTCTTCAATGTTTATGCCAACTCATGGAAGGTTAAAGATCATCTTGATCTTGGTAATCTCACTTCACATATCCCAGGTGCACCCTATGTCCTGGACACTATAGCCAGTCCAATTGACAGCTCTAAGTTCAAAATAAGTGTTGGCCCTTCCAATCTTCATGAATACTCGGCTGCCATTCTTAACGGGCTCGAGATCATGAAAATAAGTGATACCTTTGGTTTACACTCAAAGAAAGGTTCCAATGTGAAAGTTGGTCTTATAGCAGGCTTGGTAGCTGGACTGCTTGTTCTTGCTGTTTTGGCCACTCTTGTCATTGTACTGTGCAGAAGAAGAAGGAGATCGGCGCTTGTTCGTCACTTGAAGGAAGTGGAAAATTTTGGTGTGAATGGTAGAGAAAGCAACTATATCATTGGATCTGTGGCCTTTTCGAGCTCAAAAATCGGTTATCGATATCCTCTTGCAGCTATACAGGAAGCTACAGATCATTTTAGTGAAAGTTTAGTCATTGGCCTTGGTGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAACACAGAAGTGGCAGTGAAAAGAGGGACTTCTAAATCCCAGCAGGGTCTTGCAGAGTTTCGAACTGAAATCGAAATGTTATCCCAGTTTCGCCACCGTCATTTAGTATCTCTGATCGGGTACTGCGACGAGCAAAATGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATTTGCATTGGCTCAGCTAGAGGACTTCACTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTTGATCAAAACTACATGGCCAAAGTTGCAGACTTTGGACTCTCGAAGATTGGCCCCGAATTTGACAAGACTCATGTCAGTACAGCAGTGAAAGGAAGCTTCGGCTATCTCGATCCCGAATATTTAACAACGCAGCAACTGACCGAGAAATCAGACGTGTACTCTTTTGGGGTGGTTATGTTTGAAGTCCTTTGCGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAGGTGAATTTAATTGAATGGGTAATGAGGAGGAAGGACAGAGATCAACTGGAGGCGATTGTAGACGCTCGCATTCTCGAGCAAATCAAACTAGAATCTCTGAAAAAATATGTAGAGACGGCCGAAAAATGCTTGGCAGAATGCGGCATGGATCGTCCCATGATGGGAAACGTTCTGTGGAATCTGGAGTGTGCACTCCAACTCCAAGGGGATGAAAAATCTCGTCGTGGAAAGGAATCATCCTCACAAGCTGATCTTTCCAACCACTGGGAGGCAAGCGTATCGACGACTCAATTCAGCACAGGAAGCGCAGTCGATATTGCCGGTATTTCAATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2430 42.1 MRASNTHFLIWILCALCLSSSLSSEFTPDDNFLIDCGSSSNNTVGGRLFLSDDSNPNGKSLSTTSNVSSSSSSDLFSPLFRTAKVFETASQYNFKIRKQGRHWIRLYFYPFVSGNFNLSLARFSVSAQNITLLKEFQIDSGSVMKEYSLNVTSNTLVLTFTPMVNSTAFINALEVVSVPDELIPLTITSVEKVEISLGNRVLETVFRVNMGNQTVSPKDDILSRGWIADGPFLVHNNQAVVGKFVSNLTKVNMTRGSEIMAPRSVYGTATRLGADVDINANANVSWSFNVDPGYEYMIRYHFCDIIDLSLGSMFFNVYANSWKVKDHLDLGNLTSHIPGAPYVLDTIASPIDSSKFKISVGPSNLHEYSAAILNGLEIMKISDTFGLHSKKGSNVKVGLIAGLVAGLLVLAVLATLVIVLCRRRRRSALVRHLKEVENFGVNGRESNYIIGSVAFSSSKIGYRYPLAAIQEATDHFSESLVIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLDICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMRRKDRDQLEAIVDARILEQIKLESLKKYVETAEKCLAECGMDRPMMGNVLWNLECALQLQGDEKSRRGKESSSQADLSNHWEASVSTTQFSTGSAVDIAGISMSKVFAQMVREDMR 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8091470 8093899 - Lsi04G008390.1 Lsi04g00839 660888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00839 809 Gene3D - 201 382 - -
Lsi04g00839 809 Gene3D - 31 178 - -
Lsi04g00839 809 SUPERFAMILY Protein kinase-like (PK-like) 458 746 IPR011009 -
Lsi04g00839 809 CDD STKc_IRAK 482 747 - -
Lsi04g00839 809 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 801 - -
Lsi04g00839 809 Gene3D Phosphorylase Kinase; domain 1 444 551 - -
Lsi04g00839 809 PANTHER OS07G0166700 PROTEIN 17 801 IPR045272 GO:0004714|GO:0006468
Lsi04g00839 809 ProSitePatterns Protein kinases ATP-binding region signature. 482 504 IPR017441 GO:0005524
Lsi04g00839 809 Pfam Protein tyrosine and serine/threonine kinase 481 692 IPR001245 GO:0004672|GO:0006468
Lsi04g00839 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Lsi04g00839 809 SMART serkin_6 476 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00839 809 Pfam Malectin-like domain 34 381 IPR024788 -
Lsi04g00839 809 Gene3D Transferase(Phosphotransferase) domain 1 552 774 - -
Lsi04g00839 809 ProSiteProfiles Protein kinase domain profile. 476 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00839 Lsi-Chr4:8091470 Lsi04g01289 Lsi-Chr4:20305282 0 dispersed
Lsi01g00566 Lsi-Chr1:4531889 Lsi04g00839 Lsi-Chr4:8091470 7.55E-43 transposed
Lsi09g00834 Lsi-Chr9:9576550 Lsi04g00839 Lsi-Chr4:8091470 2.12E-58 transposed
Lsi10g00794 Lsi-Chr10:10747100 Lsi04g00839 Lsi-Chr4:8091470 2.00E-69 transposed
Lsi10g01334 Lsi-Chr10:17550759 Lsi04g00839 Lsi-Chr4:8091470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83572 PF12819 Malectin_like 4.40E-32 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00839 - - csv:101203398 1319.68