Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00846 ATGATACTCTCAGAGCCTCCAAAGAGTAACACCACCACCAAATTAATGCATATCAAAGAATTCTTTGGCTTCTCCCACTCCTCTTCTTCTAAGTCACTCCACTCCTCTTCTTCTTGCCCCACTTCCGGCCACTGGAGACTCCCGCCGTCGAGCTATGACCCTTCTGAATCGGCGGCCATGGAAGAGGCAATCATTAACTCCGAACCCATCATCACGAAATGGGACCCGGATTCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCCGAGCCGAATCCGGCGAGTTCCTTAACTCCGTCAACAGCCTCCGGCGAGCAATGGATTTTTTCATATTGGCTAATTCCACCTCATCCGTCCTTGTTAATGCTCAGAAGTTGATGCAGGCTGCCATGAGACGACTTGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTAGACCCTGAATCTATTTCCAGCAGGTCCTCCGACCGGTCGACGGCTGACGGGGAAACCGGTGGGGATTCCGTCAATGAGTTCGATAGAATTTCGGCCGATTTGAAATCGATTGCGGATTGTATGATAGATTCTGGGTATGGGAAAGAGTGCGTTAAAATCTACAAAGTAATCCGAAAATCGATTGTTGATGAAACTCTGTACGGCCTTGGAACAGAGAAATTCAAACTTTCGAGAATTCTGAAATGGAATTGGGATTCGCTCGAGCAGATAATCAAGACTTGGATGAATTCGGTTAAGATCGCTGTGAATACTCTGTTTCGTGGAGAAAAAATTCTGTGCGACCATGTTTTTTCGAGATCTGAAAGAATCAGAGAGTCCTGTTTTTTTGAGATCACAAAAGAAGGTGCAATTACTTTGTTCAAATTCCCGGAATTGGTCGCAAAAGGGAAGAAAGATTCCGACAAAATCTTTCTATTAATGGACTTTTACGAGGCAAATTCCGACGTATTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCAACGTCCACCATTAAAACGCAAGCTCAAACATCGATGACGAAACTCGCCGATTCAATCCGCGACATTCTTTTTGAATTTGAATCAACAATTCAAAAAGATTCATCGAAAAATCCAACCCCCGGTGGCGGAATCCACCCACTAACCCGATCAGCAATGAGCTACATCTCGTCTCTCGGCGATTACGCCGCAACCCTTTCCGACATCCTCACCGTCGAAAACTCTCCAATTCCGCCATCGTACATGGAAACCATCGCCGCCGACGACGCACTGTCCTCGCCAGTGGCGGCCCAACTGGGTTGGCTGATTCTAGTCCTCCTCTGCAAACTAGACACAAAAGCAGAGGTGTACAGAGACGTATCATTATCGTACTTATTCCTAGCGAACAACTTAAATTTCATTGTAAAGACGGTAGCGACGACGAATCTGAAGATGCTAATCGGCGGCGAGTGGGTAGCGAATCACAGGAACAAAGTGAAGGTGTACGCAGCGAATTACGAAGCGACGGCGTGGAGCAGAGTAATGAAGTCGTTGCCTGAGAGGGGTTCGGAGGAAGTGGGGTCGGCGGAGACGGCGGCGGAGGGGTTCAAGAGGTTCAATACGGCGTTTGAAGAAGCGTATCGGAAGCAGACGTCGTGGAGAGTGGAGGATGGGAATTTGAGAGACGAATTGAAGATGTCGATAGCGAAGAAAGTTGTGCCGATTTACAGAGAATTTTACGAGGGGTGTATTGAGAAAGTGAATGTGGGTGTGAGATTTTCGCCTGATGATTTGGGGAATTATTTGTCGGATTTGTTTCATGGAGTTTCTTCTTCGGGGAGTTCTTCATCTTCTTCATCTTTCAATAGGAATGTTTAA 1851 46.57 MILSEPPKSNTTTKLMHIKEFFGFSHSSSSKSLHSSSSCPTSGHWRLPPSSYDPSESAAMEEAIINSEPIITKWDPDSSEFNRITFLFRHGRAESGEFLNSVNSLRRAMDFFILANSTSSVLVNAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTADGETGGDSVNEFDRISADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYGLGTEKFKLSRILKWNWDSLEQIIKTWMNSVKIAVNTLFRGEKILCDHVFSRSERIRESCFFEITKEGAITLFKFPELVAKGKKDSDKIFLLMDFYEANSDVLPEIEVIFDSVSTSTIKTQAQTSMTKLADSIRDILFEFESTIQKDSSKNPTPGGGIHPLTRSAMSYISSLGDYAATLSDILTVENSPIPPSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAEVYRDVSLSYLFLANNLNFIVKTVATTNLKMLIGGEWVANHRNKVKVYAANYEATAWSRVMKSLPERGSEEVGSAETAAEGFKRFNTAFEEAYRKQTSWRVEDGNLRDELKMSIAKKVVPIYREFYEGCIEKVNVGVRFSPDDLGNYLSDLFHGVSSSGSSSSSSSFNRNV 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8234422 8236272 + Lsi04G008460.1 Lsi04g00846 660895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00846 616 MobiDBLite consensus disorder prediction 26 57 - -
Lsi04g00846 616 MobiDBLite consensus disorder prediction 151 171 - -
Lsi04g00846 616 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 44 609 - -
Lsi04g00846 616 MobiDBLite consensus disorder prediction 151 175 - -
Lsi04g00846 616 Gene3D Exocyst complex component Exo70 71 606 - -
Lsi04g00846 616 SUPERFAMILY Cullin repeat-like 69 598 IPR016159 -
Lsi04g00846 616 Pfam Exo70 exocyst complex subunit 243 595 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi04g00846 616 MobiDBLite consensus disorder prediction 26 45 - -
Lsi04g00846 616 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 609 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00846 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101221801 1063.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00846 Lsi-Chr4:8234422 Lsi07g00662 Lsi-Chr7:7101373 4.82E-96 dispersed
Lsi02g02843 Lsi-Chr2:34624375 Lsi04g00846 Lsi-Chr4:8234422 3.68E-37 transposed
Lsi01g01391 Lsi-Chr1:12047640 Lsi04g00846 Lsi-Chr4:8234422 7.70E-128 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi04g00846 Lsi-Chr4:8234422 7.54E-179 wgd
Lsi03g02079 Lsi-Chr3:32073809 Lsi04g00846 Lsi-Chr4:8234422 4.90E-177 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00846 Lsi_Chr04 FPKM 18.995441 20.716122 14.509482 16.206076 11.12112 10.638378 12.585675 16.667765 17.049265 16.205082