Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00846 ATGATACTCTCAGAGCCTCCAAAGAGTAACACCACCACCAAATTAATGCATATCAAAGAATTCTTTGGCTTCTCCCACTCCTCTTCTTCTAAGTCACTCCACTCCTCTTCTTCTTGCCCCACTTCCGGCCACTGGAGACTCCCGCCGTCGAGCTATGACCCTTCTGAATCGGCGGCCATGGAAGAGGCAATCATTAACTCCGAACCCATCATCACGAAATGGGACCCGGATTCTTCTGAGTTCAACAGAATCACCTTCCTCTTCCGCCATGGCCGAGCCGAATCCGGCGAGTTCCTTAACTCCGTCAACAGCCTCCGGCGAGCAATGGATTTTTTCATATTGGCTAATTCCACCTCATCCGTCCTTGTTAATGCTCAGAAGTTGATGCAGGCTGCCATGAGACGACTTGAGAAGGAATTTTACCAGATTTTGAGTGAGAATCGCCAGAATCTAGACCCTGAATCTATTTCCAGCAGGTCCTCCGACCGGTCGACGGCTGACGGGGAAACCGGTGGGGATTCCGTCAATGAGTTCGATAGAATTTCGGCCGATTTGAAATCGATTGCGGATTGTATGATAGATTCTGGGTATGGGAAAGAGTGCGTTAAAATCTACAAAGTAATCCGAAAATCGATTGTTGATGAAACTCTGTACGGCCTTGGAACAGAGAAATTCAAACTTTCGAGAATTCTGAAATGGAATTGGGATTCGCTCGAGCAGATAATCAAGACTTGGATGAATTCGGTTAAGATCGCTGTGAATACTCTGTTTCGTGGAGAAAAAATTCTGTGCGACCATGTTTTTTCGAGATCTGAAAGAATCAGAGAGTCCTGTTTTTTTGAGATCACAAAAGAAGGTGCAATTACTTTGTTCAAATTCCCGGAATTGGTCGCAAAAGGGAAGAAAGATTCCGACAAAATCTTTCTATTAATGGACTTTTACGAGGCAAATTCCGACGTATTGCCGGAAATTGAAGTCATATTCGACTCTGTTTCAACGTCCACCATTAAAACGCAAGCTCAAACATCGATGACGAAACTCGCCGATTCAATCCGCGACATTCTTTTTGAATTTGAATCAACAATTCAAAAAGATTCATCGAAAAATCCAACCCCCGGTGGCGGAATCCACCCACTAACCCGATCAGCAATGAGCTACATCTCGTCTCTCGGCGATTACGCCGCAACCCTTTCCGACATCCTCACCGTCGAAAACTCTCCAATTCCGCCATCGTACATGGAAACCATCGCCGCCGACGACGCACTGTCCTCGCCAGTGGCGGCCCAACTGGGTTGGCTGATTCTAGTCCTCCTCTGCAAACTAGACACAAAAGCAGAGGTGTACAGAGACGTATCATTATCGTACTTATTCCTAGCGAACAACTTAAATTTCATTGTAAAGACGGTAGCGACGACGAATCTGAAGATGCTAATCGGCGGCGAGTGGGTAGCGAATCACAGGAACAAAGTGAAGGTGTACGCAGCGAATTACGAAGCGACGGCGTGGAGCAGAGTAATGAAGTCGTTGCCTGAGAGGGGTTCGGAGGAAGTGGGGTCGGCGGAGACGGCGGCGGAGGGGTTCAAGAGGTTCAATACGGCGTTTGAAGAAGCGTATCGGAAGCAGACGTCGTGGAGAGTGGAGGATGGGAATTTGAGAGACGAATTGAAGATGTCGATAGCGAAGAAAGTTGTGCCGATTTACAGAGAATTTTACGAGGGGTGTATTGAGAAAGTGAATGTGGGTGTGAGATTTTCGCCTGATGATTTGGGGAATTATTTGTCGGATTTGTTTCATGGAGTTTCTTCTTCGGGGAGTTCTTCATCTTCTTCATCTTTCAATAGGAATGTTTAA 1851 46.57 MILSEPPKSNTTTKLMHIKEFFGFSHSSSSKSLHSSSSCPTSGHWRLPPSSYDPSESAAMEEAIINSEPIITKWDPDSSEFNRITFLFRHGRAESGEFLNSVNSLRRAMDFFILANSTSSVLVNAQKLMQAAMRRLEKEFYQILSENRQNLDPESISSRSSDRSTADGETGGDSVNEFDRISADLKSIADCMIDSGYGKECVKIYKVIRKSIVDETLYGLGTEKFKLSRILKWNWDSLEQIIKTWMNSVKIAVNTLFRGEKILCDHVFSRSERIRESCFFEITKEGAITLFKFPELVAKGKKDSDKIFLLMDFYEANSDVLPEIEVIFDSVSTSTIKTQAQTSMTKLADSIRDILFEFESTIQKDSSKNPTPGGGIHPLTRSAMSYISSLGDYAATLSDILTVENSPIPPSYMETIAADDALSSPVAAQLGWLILVLLCKLDTKAEVYRDVSLSYLFLANNLNFIVKTVATTNLKMLIGGEWVANHRNKVKVYAANYEATAWSRVMKSLPERGSEEVGSAETAAEGFKRFNTAFEEAYRKQTSWRVEDGNLRDELKMSIAKKVVPIYREFYEGCIEKVNVGVRFSPDDLGNYLSDLFHGVSSSGSSSSSSSFNRNV 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8234422 8236272 + Lsi04G008460.1 Lsi04g00846 660895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00846 616 MobiDBLite consensus disorder prediction 26 57 - -
Lsi04g00846 616 MobiDBLite consensus disorder prediction 151 171 - -
Lsi04g00846 616 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 44 609 - -
Lsi04g00846 616 MobiDBLite consensus disorder prediction 151 175 - -
Lsi04g00846 616 Gene3D Exocyst complex component Exo70 71 606 - -
Lsi04g00846 616 SUPERFAMILY Cullin repeat-like 69 598 IPR016159 -
Lsi04g00846 616 Pfam Exo70 exocyst complex subunit 243 595 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi04g00846 616 MobiDBLite consensus disorder prediction 26 45 - -
Lsi04g00846 616 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 609 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00846 Lsi-Chr4:8234422 Lsi07g00662 Lsi-Chr7:7101373 4.82E-96 dispersed
Lsi02g02843 Lsi-Chr2:34624375 Lsi04g00846 Lsi-Chr4:8234422 3.68E-37 transposed
Lsi01g01391 Lsi-Chr1:12047640 Lsi04g00846 Lsi-Chr4:8234422 7.70E-128 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi04g00846 Lsi-Chr4:8234422 7.54E-179 wgd
Lsi03g02079 Lsi-Chr3:32073809 Lsi04g00846 Lsi-Chr4:8234422 4.90E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00846 K07195 - csv:101221801 1063.52