Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00854 ATGGTCCTCGAAATTGCGGTCAAGGCTGCCACTGGTTCACCTGATGTGGTTGGGGACTGCCCTTTCTGCCATAGGGTTGTCTTAACTCTGGAGGAGAAGAAAGTTCCTTACAAATTGCTTCTCATCAATCTATCCGACAAACCCAGTTGGTTATTGGAAGTGAACCCAGAAGGGAAGGTGCCGGTGGCGAAGTTTGATGGCAAATGGGTTCCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGAGCCTTCTCTTGTTACTCCTCCTCAATTTTCTTCTGTAGGATCAAAGATGTTTGGTGCTTTTGTAAAATTCTTGTTAAGCAAGGACCCGAATGATGGTACAGAGCAGGCTTTCCTTGAAGAGTTGAAGGCGCTCAATGAGCATCTTAAGGCTCATGGTCCTTATATTGCTGGAGAGAAGGTAACTGCAGTTGATTTGAGTCTGGCACCAAAGTTGTTCCATGTTGATGTTGCTCTTGGCCATTTTAAGAAGTGGTCTATCCCCGAAGACTTGGCCAGTTTAATCGCCTACAAAGAGTTGCTTTTTGCTCGAGAATCTTTCGTGAAGACGAAAACTGCCCCGGAATATGTAATTGCTGGATGGGGGCCGAAGGTGAATCCTGCATGA 642 45.95 MVLEIAVKAATGSPDVVGDCPFCHRVVLTLEEKKVPYKLLLINLSDKPSWLLEVNPEGKVPVAKFDGKWVPDSDVIVGILEEKYPEPSLVTPPQFSSVGSKMFGAFVKFLLSKDPNDGTEQAFLEELKALNEHLKAHGPYIAGEKVTAVDLSLAPKLFHVDVALGHFKKWSIPEDLASLIAYKELLFARESFVKTKTAPEYVIAGWGPKVNPA 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8304460 8307933 + Lsi04G008540.1 Lsi04g00854 660903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00854 213 Pfam Glutathione S-transferase, N-terminal domain 19 87 IPR004045 -
Lsi04g00854 213 Gene3D Glutaredoxin 1 89 - -
Lsi04g00854 213 SFLD Glutathione Transferase (cytosolic) 19 166 IPR040079 -
Lsi04g00854 213 SFLD Main (cytGST) 19 166 - -
Lsi04g00854 213 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Lsi04g00854 213 Pfam Glutathione S-transferase, C-terminal domain 120 177 - -
Lsi04g00854 213 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 - -
Lsi04g00854 213 Gene3D - 90 212 - -
Lsi04g00854 213 CDD GST_N_family 20 77 - -
Lsi04g00854 213 SUPERFAMILY GST C-terminal domain-like 84 210 IPR036282 -
Lsi04g00854 213 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Lsi04g00854 213 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 IPR044627 GO:0033355|GO:0045174|GO:0098869
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00854 Lsi-Chr4:8304460 Lsi05g00364 Lsi-Chr5:4609965 7.80E-92 dispersed
Lsi04g00854 Lsi-Chr4:8304460 Lsi03g02065 Lsi-Chr3:31963867 5.31E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00854 K21888 - csv:101203666 356.295