Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00858 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCCTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATTTTCCCTGCTCCATTAACTCCAAGATCACAACAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCGGATGATATTGGCGAGTGGCCCCAACCTCCTACTCCAAGTGGCAGGGGAAATGGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCAGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACATAATGGAATTACTCATGTGTTGAATTGTGTAGGATTTGTTTGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTATGGTTGCAGGATAGCCCGTCTGAGGACATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGGGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCACGGTCAACGTCCTTGGTGATTGCCTATTTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAGTATGTGAAGGCAGCCAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGTCAAAAGAGGGTCCATGCTTTCCCCCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCGCCGTCTGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAGATTGTTCGATATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAGTTAATCTTGGGGAATTAAAAGTTAAGCCTTATTCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAGTTTGTATCAGCTCCTCGAATTTCGCTTTCTAGGGTCTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCAAAATCTTCATCACCTTCGGCATTTTCTTTATCGTCATCATCTTCTTCTCCTATCTATCTTTCACCGGACTCTCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCCTCAGTTCCAGTTTCTTCTTCACTGTCTAGTTTCTCTAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTATGCCCAACGGTCCAGAAACTCATGATGCGGTCCCTTTGGAATCAAGTTCTCGCACATTCTCATTCCCATCCAAAAAGTTCTCACCTTCACTCGCAGAACGCCGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCCATTCAAGAAGATGTTAAGAGGAAAAACAAGACTTCTTGCCCTCTTAATGTATCAATTAATATTAAAAATGGCTCGGAGCCTATGGATAAGGTTGATAATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATTGAAAATGGAATGGACATAAGGGTAGGTAGCGTGGCCTCATGCCAGCAGGAAACTAAAGTTGCTGGACAATCTGCTGGTTCATGGAAAAGTTATCCCAAACTTTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGAAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCAGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAAAAGGATGACATGATGCTGTATATTTGGGTAGGAAGGTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAGAGACTTGGTTGATTTAGAAAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACGGAAATAGGTCTGCCAGAAAATACAGAAATTAAGGAGACGCTTGAAAATCCAAGTCGTTTTATAGCAAGTCTTAACAAAGTTGTACAGAGCTGTAACACCCCACCACGATCAATCAAATCTTTCTTTAACTCCTCTTGGGTTCCATTTCTTTTCTCTCAATCTGAACCTGTGTTGAAAAAGAAAATGATGTCCATGAATGGTAAAACCGAAACCTGA 2685 42.05 MVGSEEDSGTSGAAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKVNLGELKVKPYSGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKEFVSAPRISLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLISSNSSLESMPNGPETHDAVPLESSSRTFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLAIQEDVKRKNKTSCPLNVSINIKNGSEPMDKVDNEQTSSTQNFKNIENGMDIRVGSVASCQQETKVAGQSAGSWKSYPKLFEEGMVSTVSNGKQDGEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGRSFDHDLSQVHVKRDRDLVDLEKIDWVKVGQYVLTEIGLPENTEIKETLENPSRFIASLNKVVQSCNTPPRSIKSFFNSSWVPFLFSQSEPVLKKKMMSMNGKTET 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8372045 8377358 + Lsi04G008580.1 Lsi04g00858 660907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00858 894 Gene3D Severin 304 399 IPR029006 -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 574 618 - -
Lsi04g00858 894 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Lsi04g00858 894 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Lsi04g00858 894 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Lsi04g00858 894 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Lsi04g00858 894 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Lsi04g00858 894 MobiDBLite consensus disorder prediction 30 78 - -
Lsi04g00858 894 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Lsi04g00858 894 SMART VILL_6 305 399 IPR007122 GO:0051015
Lsi04g00858 894 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 839 - -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 590 606 - -
Lsi04g00858 894 PANTHER MKPA PROTEIN 1 839 - -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 100 120 - -
Lsi04g00858 894 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Lsi04g00858 894 CDD DSP 154 288 - -
Lsi04g00858 894 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00606 Lsi-Chr4:5589108 Lsi04g00858 Lsi-Chr4:8372045 7.93E-06 dispersed
Lsi04g00858 Lsi-Chr4:8372045 Lsi06g01680 Lsi-Chr6:26986337 1.18E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00858 - - csv:101223210 1467.98