Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00858 ATGGTGGGCTCTGAGGAGGACTCTGGTACTTCTGGGGCCGCGGCGGTGCAGCTCTCTGGCAGTCGGAAAATGTTCTGGCGCTCGGCCTCATGGTCTGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGTGGAGACCCCAATGGGAATCTTGGTGATAGTAATGGACCAAGCCGAATTTTCCCTGCTCCATTAACTCCAAGATCACAACAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTAGATGAATGGCCGAAGGCGGGGTCGGATGATATTGGCGAGTGGCCCCAACCTCCTACTCCAAGTGGCAGGGGAAATGGCGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCAGATAAGAATTGTGGGCTGGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACATAATGGAATTACTCATGTGTTGAATTGTGTAGGATTTGTTTGCCCGGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTATGGTTGCAGGATAGCCCGTCTGAGGACATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGGGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCACGGTCAACGTCCTTGGTGATTGCCTATTTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAGTATGTGAAGGCAGCCAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAGTTATTACAGTGTCAAAAGAGGGTCCATGCTTTCCCCCTTAGCCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCACACTCACCATATGATCCTTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCGCCGTCTGCTCTGGATTCTAGAGGTGCATTTATCATTCATATACCCTCTGCCATATTTGTTTGGATTGGTAAGAACTGTGAAGCAATCATGGAAAGAGATGCGAGGGGAGCTGTTGTGCAGATTGTTCGATATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAACAAACTTTTGGGATTCTTTTGCAAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAGTTAATCTTGGGGAATTAAAAGTTAAGCCTTATTCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTCGTTCCTCCATTTCCTTCATCTGAGAATGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGGCGTAAGTTTGCCTCTGGAAATATGAAAGAGTTTGTATCAGCTCCTCGAATTTCGCTTTCTAGGGTCTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCAAAATCTTCATCACCTTCGGCATTTTCTTTATCGTCATCATCTTCTTCTCCTATCTATCTTTCACCGGACTCTCTCTCTTCTGATTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCCTCAGTTCCAGTTTCTTCTTCACTGTCTAGTTTCTCTAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTATGCCCAACGGTCCAGAAACTCATGATGCGGTCCCTTTGGAATCAAGTTCTCGCACATTCTCATTCCCATCCAAAAAGTTCTCACCTTCACTCGCAGAACGCCGAGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCCATTCAAGAAGATGTTAAGAGGAAAAACAAGACTTCTTGCCCTCTTAATGTATCAATTAATATTAAAAATGGCTCGGAGCCTATGGATAAGGTTGATAATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATTGAAAATGGAATGGACATAAGGGTAGGTAGCGTGGCCTCATGCCAGCAGGAAACTAAAGTTGCTGGACAATCTGCTGGTTCATGGAAAAGTTATCCCAAACTTTTTGAAGAAGGCATGGTATCCACTGTGTCAAATGGAAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTGGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCAGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAAAAGGATGACATGATGCTGTATATTTGGGTAGGAAGGTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAGAGACTTGGTTGATTTAGAAAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACGGAAATAGGTCTGCCAGAAAATACAGAAATTAAGGAGACGCTTGAAAATCCAAGTCGTTTTATAGCAAGTCTTAACAAAGTTGTACAGAGCTGTAACACCCCACCACGATCAATCAAATCTTTCTTTAACTCCTCTTGGGTTCCATTTCTTTTCTCTCAATCTGAACCTGTGTTGAAAAAGAAAATGATGTCCATGAATGGTAAAACCGAAACCTGA 2685 42.05 MVGSEEDSGTSGAAAVQLSGSRKMFWRSASWSASRSSLHHPEVNREGGDPNGNLGDSNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKVNLGELKVKPYSGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKEFVSAPRISLSRVYSDSLMMVHFSAKSSSPSAFSLSSSSSSPIYLSPDSLSSDSSSSSSSKYFSESSLDSPSASSPSVPVSSSLSSFSNMSLISSNSSLESMPNGPETHDAVPLESSSRTFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLAIQEDVKRKNKTSCPLNVSINIKNGSEPMDKVDNEQTSSTQNFKNIENGMDIRVGSVASCQQETKVAGQSAGSWKSYPKLFEEGMVSTVSNGKQDGEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGRSFDHDLSQVHVKRDRDLVDLEKIDWVKVGQYVLTEIGLPENTEIKETLENPSRFIASLNKVVQSCNTPPRSIKSFFNSSWVPFLFSQSEPVLKKKMMSMNGKTET 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8372045 8377358 + Lsi04G008580.1 Lsi04g00858 660907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00858 894 Gene3D Severin 304 399 IPR029006 -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 574 618 - -
Lsi04g00858 894 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Lsi04g00858 894 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Lsi04g00858 894 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Lsi04g00858 894 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Lsi04g00858 894 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Lsi04g00858 894 MobiDBLite consensus disorder prediction 30 78 - -
Lsi04g00858 894 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Lsi04g00858 894 SMART VILL_6 305 399 IPR007122 GO:0051015
Lsi04g00858 894 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 839 - -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 590 606 - -
Lsi04g00858 894 PANTHER MKPA PROTEIN 1 839 - -
Lsi04g00858 894 MobiDBLite consensus disorder prediction 100 120 - -
Lsi04g00858 894 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Lsi04g00858 894 CDD DSP 154 288 - -
Lsi04g00858 894 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00858 - - - csv:101223210 1467.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00606 Lsi-Chr4:5589108 Lsi04g00858 Lsi-Chr4:8372045 7.93E-06 dispersed
Lsi04g00858 Lsi-Chr4:8372045 Lsi06g01680 Lsi-Chr6:26986337 1.18E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g228 Blo04g00099 Blo13g00894 . . Bpe04g01698 . . Bma08g01128 Cmo04g00237 Cmo04g01282 Cma04g01207 Cma04g00232 Car04g01109 . . . Cpe01g00201 . . . . . . . . . . . . . . Cone1ag1316 Cone5ag0297 . . . . Chy10g00579 Cme10g00858 . . . . Bpe04g01698 . . . . . . . . . . Cpe01g01110 . . . . . . . . . . . . . . . Lsi04g00858 Csa05g00673 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004035 1 5 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00858 Lsi_Chr04 FPKM 0.0 0.289914 0.212144 0.092317 1.042826 0.835193 0.589449 0.0 0.0 0.0