Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00872 ATGAACTATGATAACTCCTCTAGAATTGAAACCAAACGTGGCCATCAATGGTTCATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATCGAAACTGTAAATTCTAGACCTGTTGCAGGAGTTCCACACATGAATATTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTTCCTGGACACTTCACTGATCGTCTTTTTGGCTCAGAGCCTATACGAACTGTCAACTTAGTTGATAGAGGCATCACTGTTGGAAATGCAAATATGAACATGGGTAGAAAGGAATTCGAGAATCATTTTACAAACAACCCATCTGTTGGCTTGTCCATGTCTCAGTCCATTGAGGATCCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATTCTGATGTTGGCATGTCTGCTTCTTTGGGGCATGCCTATAGTAGGGGACCGGGTGATAATGGTACAATTGCAATGGGTACAGCATTTAACAAAAACCATGAGAATGCCATATCGTTGGGCCAAACTTATAATAGTAGAGATGAGAATGCCATCTCTGTTGGCCCTGCATATCACAAGACAGATGACAATTTTATTTCGATGGGTCATGCTTTCAGCAAGGGTGATGGGAGTTTTATTACAATTGGTCATAACTATAGCAAGGGAGATAATAGCATCCTATCGATGAGTCAGCCTTTTGACAAGGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCTGAAGGAAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGGAAGAAAATTTTATAACAATGGGGCCAACCTACAGTAAGGCGGGTGATACTTTCATTTCAATGGCTTCATCCTTTAATAAGGGAAATGATGATAACTTGTCCATGGGTCCAACTGACATTGTACACGTCGGTCCTAAATTTGACAAAGCAGATTCTGGTGCTGTGTCAATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGTTTTGATGATGAGAATGGGACAGATAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGACATCTGCCCAAGCATCAGAAGGTTCAACCCTGAGAGATTCAGTTGATCCCAATATGGAAGTAAACATTAACAATGCCATAAAGGTTGATGGGAAAATGGACACAAGTTCCAAGAATAAAGAGCCGAGGATGAGTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATTAAAGGGACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTCCAAGAGCTAAAGAACACCCCTCAGGAGATGCTATTTGATGCAATTCAGAATGTGACTGGGTCTCCTATTAATCAGAAGAACTTCCGTATTTGGAAAGCATCTTACCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATTATGCCTTCTTGA 1680 40.89 MNYDNSSRIETKRGHQWFMDGSAPELFSSKKQAIETVNSRPVAGVPHMNISPWENTSSFQSVPGHFTDRLFGSEPIRTVNLVDRGITVGNANMNMGRKEFENHFTNNPSVGLSMSQSIEDPSSCLNFGGIRKVKVNQVRDSDVGMSASLGHAYSRGPGDNGTIAMGTAFNKNHENAISLGQTYNSRDENAISVGPAYHKTDDNFISMGHAFSKGDGSFITIGHNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGEENFITMGPTYSKAGDTFISMASSFNKGNDDNLSMGPTDIVHVGPKFDKADSGAVSMAHNYHKGESNTISFGGFDDENGTDNPSGGIISSYDLLMANQTSAQASEGSTLRDSVDPNMEVNINNAIKVDGKMDTSSKNKEPRMSKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8531550 8540511 + Lsi04G008720.1 Lsi04g00872 660921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00872 559 MobiDBLite consensus disorder prediction 400 421 - -
Lsi04g00872 559 Pfam Tify domain binding domain 452 507 IPR032308 -
Lsi04g00872 559 PANTHER N-LYSINE METHYLTRANSFERASE 1 559 - -
Lsi04g00872 559 PANTHER AUTOIMMUNE REGULATOR 1 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00872 - - - csv:101206313 1066.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00413 Lsi04g00872 CCT
Lsi03g00413 Lsi04g00872 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00872 Lsi-Chr4:8531550 Lsi03g01970 Lsi-Chr3:31110745 4.22E-06 dispersed
Lsi10g01351 Lsi-Chr10:17726751 Lsi04g00872 Lsi-Chr4:8531550 3.10E-37 wgd
Lsi03g02089 Lsi-Chr3:32162737 Lsi04g00872 Lsi-Chr4:8531550 7.10E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g255 . . . Bda15g00213 . . Bma03g00301 . Cmo04g00229 Cmo04g01272 Cma04g01200 Cma04g00226 Car04g01102 . . . Cpe01g00193 . . . . . . . Cla07g00294 Cam07g0311 Cec07g0355 Cco07g0316 Clacu07g0303 Cmu07g0360 Cre07g0670 Cone1ag1303 Cone5ag0283 . . Lsi03g00413 . Chy10g00556 Cme10g00876 Blo13g00755 Blo04g00288 . . Bpe04g01846 . . Bma08g00988 . . . . . . . Cpe01g01104 . . . . . . . . . . . . . . . Lsi04g00872 Csa05g00695 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g02089 . 18 815 PHD Transcription Factor Family AT3G53680 53.3 9.3e-242 833.6
Lsi04g00872 CCT,ECH 411 540 PHD Transcription Factor Family AT3G53680 54.6 1.1e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00872 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0