Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00872 ATGAACTATGATAACTCCTCTAGAATTGAAACCAAACGTGGCCATCAATGGTTCATGGATGGCAGTGCACCAGAGCTATTCAGTAGCAAGAAGCAAGCAATCGAAACTGTAAATTCTAGACCTGTTGCAGGAGTTCCACACATGAATATTTCTCCCTGGGAAAACACTTCAAGTTTTCAGTCAGTTCCTGGACACTTCACTGATCGTCTTTTTGGCTCAGAGCCTATACGAACTGTCAACTTAGTTGATAGAGGCATCACTGTTGGAAATGCAAATATGAACATGGGTAGAAAGGAATTCGAGAATCATTTTACAAACAACCCATCTGTTGGCTTGTCCATGTCTCAGTCCATTGAGGATCCCTCATCATGCCTCAATTTTGGTGGAATTAGAAAAGTTAAAGTCAATCAAGTCAGGGATTCTGATGTTGGCATGTCTGCTTCTTTGGGGCATGCCTATAGTAGGGGACCGGGTGATAATGGTACAATTGCAATGGGTACAGCATTTAACAAAAACCATGAGAATGCCATATCGTTGGGCCAAACTTATAATAGTAGAGATGAGAATGCCATCTCTGTTGGCCCTGCATATCACAAGACAGATGACAATTTTATTTCGATGGGTCATGCTTTCAGCAAGGGTGATGGGAGTTTTATTACAATTGGTCATAACTATAGCAAGGGAGATAATAGCATCCTATCGATGAGTCAGCCTTTTGACAAGGGGGATGACTCTTTTATTTCAATGGGTCAATCTTATGAGAAGGCTGAAGGAAATATCATTTCTTTTGGTGCCTCCTACAATAAAGGGGAAGAAAATTTTATAACAATGGGGCCAACCTACAGTAAGGCGGGTGATACTTTCATTTCAATGGCTTCATCCTTTAATAAGGGAAATGATGATAACTTGTCCATGGGTCCAACTGACATTGTACACGTCGGTCCTAAATTTGACAAAGCAGATTCTGGTGCTGTGTCAATGGCTCACAACTATCATAAGGGTGAGAGTAATACCATATCTTTTGGAGGTTTTGATGATGAGAATGGGACAGATAATCCTTCTGGTGGGATCATTAGCAGTTATGACTTGTTAATGGCTAATCAGACATCTGCCCAAGCATCAGAAGGTTCAACCCTGAGAGATTCAGTTGATCCCAATATGGAAGTAAACATTAACAATGCCATAAAGGTTGATGGGAAAATGGACACAAGTTCCAAGAATAAAGAGCCGAGGATGAGTAAGAAGGTGCCACCAAATAGCTTCCCTTCAAATGTTAAAAGCTTGCTCTCAACTGGTATGCTTGATGGGGTTCCTGTGAAATATGTTTCTTGGTCACGGGAGAAAAATCTCAAGGGAATTATTAAAGGGACTGGATACTTGTGCAGCTGTGACAACTGCAATCATTCAAAGGCTCTCAATGCTTATGAATTTGAGAGGCACGCTGGCTGCAAAACCAAACATCCAAATAACCACATTTACTTTGAGAATGGTAAAACTATCTATGCTGTTGTCCAAGAGCTAAAGAACACCCCTCAGGAGATGCTATTTGATGCAATTCAGAATGTGACTGGGTCTCCTATTAATCAGAAGAACTTCCGTATTTGGAAAGCATCTTACCAAGCTGCCACCCTTGAACTCCAGCGTATTTATGGAAAAGATGAAGTAATTATGCCTTCTTGA 1680 40.89 MNYDNSSRIETKRGHQWFMDGSAPELFSSKKQAIETVNSRPVAGVPHMNISPWENTSSFQSVPGHFTDRLFGSEPIRTVNLVDRGITVGNANMNMGRKEFENHFTNNPSVGLSMSQSIEDPSSCLNFGGIRKVKVNQVRDSDVGMSASLGHAYSRGPGDNGTIAMGTAFNKNHENAISLGQTYNSRDENAISVGPAYHKTDDNFISMGHAFSKGDGSFITIGHNYSKGDNSILSMSQPFDKGDDSFISMGQSYEKAEGNIISFGASYNKGEENFITMGPTYSKAGDTFISMASSFNKGNDDNLSMGPTDIVHVGPKFDKADSGAVSMAHNYHKGESNTISFGGFDDENGTDNPSGGIISSYDLLMANQTSAQASEGSTLRDSVDPNMEVNINNAIKVDGKMDTSSKNKEPRMSKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCNHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSPINQKNFRIWKASYQAATLELQRIYGKDEVIMPS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8531550 8540511 + Lsi04G008720.1 Lsi04g00872 660921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00872 559 MobiDBLite consensus disorder prediction 400 421 - -
Lsi04g00872 559 Pfam Tify domain binding domain 452 507 IPR032308 -
Lsi04g00872 559 PANTHER N-LYSINE METHYLTRANSFERASE 1 559 - -
Lsi04g00872 559 PANTHER AUTOIMMUNE REGULATOR 1 559 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00413 Lsi04g00872 CCT
Lsi03g00413 Lsi04g00872 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00872 Lsi-Chr4:8531550 Lsi03g01970 Lsi-Chr3:31110745 4.22E-06 dispersed
Lsi10g01351 Lsi-Chr10:17726751 Lsi04g00872 Lsi-Chr4:8531550 3.10E-37 wgd
Lsi03g02089 Lsi-Chr3:32162737 Lsi04g00872 Lsi-Chr4:8531550 7.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00872 - - csv:101206313 1066.6