Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00873 | ATGGAGGGTTTTGTGAAGTTTTTGGGTTTGGCAAAGCCATATTTTGGAGTTCTTTTTATGCAATTTGGTTCAGCTGGAATGGCCATCCTTGCAAAGTTTGCTTTGAACAAAGGGATGAGCCAATATGTTTTTGTGTTTTATCGTATGATTATTGCTACTCTTATCATCGCTCCTTTTGCCATCATCTTTGAAAGGAAAGTGAAAACGAAGATGACTATTCCGTTGGTCTTCAAGATTGTGATGCTGGGTTTATTGGAGCCAGTGATTGATCTGAACTTATACTTTACTGGAATGAAGTATACAACAGCAACCTTTGCAGTTGCCATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAACGGGGAAGCCAAGCAAAAATCCTAGGAACCATAGTAACAGTTGGAGGAGCCATGATTATGACATTCATAAGAGGACCCATGTTGAATCTGCCATGGACAAAAGCTAACCACCCCTCTGCTTCTTCAACTGGTTCAGTAAATCACCAAAGCCAAATCAAGGGCTCCCTCATGATTGCAATTGGCTGCATTTGCCAGTCAGCCTTCATCATTCTTCAGGCAATTACATTGAAATTGTATCCGGCCGAGCTGTCTCTTACAGCATTGATATGTTTGGTGGCCACCATTGGAGGTTGTGTGGTGGCTTTGGTCATGGAGAGGGGGAATCCTTCTGCTTGGGCTTTGAATTTTGATAGCCAGCTTCTGTCTGTGGTTTATGCTGGAGTAATATGTTCAGGGGTAACATATTATATTCAAGGAATGGTGATGCAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTGTCCATGATTTTTGTAGCAATCATGAGCTCCTTCATCTTGTCTGAGATTATGTTGCTGGGAAGGATTATTGGAGCAGTGACCATAATCACTGGATTGTACCTGGTTTTGTGGGGCAAAAGAAAAGATCAGTTTTCAGTTAAATCAGACTGTGATAACATAGCAGATAGTAAGCAACAAATGACTGAAACAGGCGAGGCTTCGAAGACGGTTCAATTGAGTCAAGAATCCGCCTCAGTTTGA | 1107 | 41.82 | MEGFVKFLGLAKPYFGVLFMQFGSAGMAILAKFALNKGMSQYVFVFYRMIIATLIIAPFAIIFERKVKTKMTIPLVFKIVMLGLLEPVIDLNLYFTGMKYTTATFAVAMCNVLPAFAFLMAWACRLEKVNILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKANHPSASSTGSVNHQSQIKGSLMIAIGCICQSAFIILQAITLKLYPAELSLTALICLVATIGGCVVALVMERGNPSAWALNFDSQLLSVVYAGVICSGVTYYIQGMVMQIKGPVFVTAFNPLSMIFVAIMSSFILSEIMLLGRIIGAVTIITGLYLVLWGKRKDQFSVKSDCDNIADSKQQMTETGEASKTVQLSQESASV | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8539635 | 8546066 | - | Lsi04G008730.1 | Lsi04g00873 | 660922 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00873 | 368 | Pfam | EamA-like transporter family | 14 | 153 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi04g00873 | 368 | Pfam | EamA-like transporter family | 186 | 325 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi04g00873 | 368 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 231 | 330 | - | - | |
| Lsi04g00873 | 368 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
| Lsi04g00873 | 368 | PANTHER | WAT1-RELATED PROTEIN | 9 | 341 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi04g00873 | 368 | PANTHER | WAT1-RELATED PROTEIN | 9 | 341 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01666 | Lsi-Chr2:22473284 | Lsi04g00873 | Lsi-Chr4:8539635 | 1.02E-87 | dispersed | |
| Lsi02g01668 | Lsi-Chr2:22494244 | Lsi04g00873 | Lsi-Chr4:8539635 | 2.78E-149 | dispersed | |
| Lsi03g01629 | Lsi-Chr3:27416313 | Lsi04g00873 | Lsi-Chr4:8539635 | 1.57E-106 | dispersed | |
| Lsi04g00873 | Lsi-Chr4:8539635 | Lsi04g02384 | Lsi-Chr4:30985937 | 3.15E-96 | dispersed | |
| Lsi04g00873 | Lsi-Chr4:8539635 | Lsi04g00874 | Lsi-Chr4:8564497 | 2.48E-159 | tandem | |
| Lsi09g00112 | Lsi-Chr9:1057080 | Lsi04g00873 | Lsi-Chr4:8539635 | 4.94E-51 | transposed | |
| Lsi01g01401 | Lsi-Chr1:12138098 | Lsi04g00873 | Lsi-Chr4:8539635 | 3.75E-148 | wgd | |
| Lsi02g01665 | Lsi-Chr2:22456647 | Lsi04g00873 | Lsi-Chr4:8539635 | 2.16E-112 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00873 | - | - | csv:101206072 | 629.787 |