Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00874 ATGGAGAGTTTTGTAAGACTTTTGGGTACAACAAAGCTGTATTTTGGAGTGATTTTCGTGCAGTTTGGTTATGCTGGAATGACGATTCTTACTAAATCAGCTTTGGACAAAGGAATGAGCCAATATATTTTCGTGGTTTATCGTCAAGTTGCTGCTACTCTTGTCATTGCTCCTTTTGCCATTATCTTTGAAAGGCCAGTGATCGATCAGAACTTGTTTTATACTGGAATGAAGTACACAACAGCAACCTTTGCAGCTGCCATGTGCAATGTTCTGCCAGCTTTTGTTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGAGGAAGCCAAGCAAAAATCCTAGGAACAATAGTGACAGTAGGAGGAGCCATGATTATGACCTTCATAAAAGGCCCCATGTTGAATTTACCGTGGACAAAATTACCCAATCACCCCTCTGCTTCTTCTTCATCAGCTGCTTCTCCAAATCACCAACGTACAATCATTGGCTTCCTCATGATTTCAATTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAATCGTACCCGGCCGAGCTGTCGCTTACAGCATTGATATGCTTGGTGGGCACCATTGGAGGCTCTGGGGGAGTAATATGTTCAGGGGTAACTTATTATATTCAAGGAGTGGTGATGCAAAAAAAAGGGCCTGTTTTTTTCACTGCATTCAATCCTCTGGCAATGGTTCTTGTTGCAATCATGAGCTATTTCATCTTGTCTGAGATAATGTTGTTGGGAAGAATTATTGGAGTAGTGGTCATATTCATTGGCTTGTATCTGGTTTTGTGGGGGAAAACCAAAGATCAGCCTTCATTACTTAAATCAGACTGTGATAAGATAACACATTGTGAACAACAAATGATCACTGCAAAAGATGACGCTTCGAAGACCACGACGGTTCGATCGAGTCAAGAATTCGTCGCGCTTGATGTTGCAAAAGAAGAGAGAAATTGA 1008 41.57 MESFVRLLGTTKLYFGVIFVQFGYAGMTILTKSALDKGMSQYIFVVYRQVAATLVIAPFAIIFERPVIDQNLFYTGMKYTTATFAAAMCNVLPAFVFLMAWACRLEKVNILKRGSQAKILGTIVTVGGAMIMTFIKGPMLNLPWTKLPNHPSASSSSAASPNHQRTIIGFLMISIGCICWSAFITLQAITLKSYPAELSLTALICLVGTIGGSGGVICSGVTYYIQGVVMQKKGPVFFTAFNPLAMVLVAIMSYFILSEIMLLGRIIGVVVIFIGLYLVLWGKTKDQPSLLKSDCDKITHCEQQMITAKDDASKTTTVRSSQEFVALDVAKEERN 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8564497 8568597 - Lsi04G008740.1 Lsi04g00874 660923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 66 213 - -
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 214 292 - -
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 9 64 - -
Lsi04g00874 335 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 134 - -
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 66 213 IPR030184 GO:0016021|GO:0022857
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 214 292 IPR030184 GO:0016021|GO:0022857
Lsi04g00874 335 PANTHER WAT1-RELATED PROTEIN 9 64 IPR030184 GO:0016021|GO:0022857
Lsi04g00874 335 SUPERFAMILY Multidrug resistance efflux transporter EmrE 214 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g01665 Lsi04g00874 CCT
Lsi02g01665 Lsi04g00874 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00874 Lsi-Chr4:8564497 Lsi04g02384 Lsi-Chr4:30985937 7.01E-92 dispersed
Lsi04g00873 Lsi-Chr4:8539635 Lsi04g00874 Lsi-Chr4:8564497 2.48E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00874 - - bhj:120081745 530.406