Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00874 | ATGGAGAGTTTTGTAAGACTTTTGGGTACAACAAAGCTGTATTTTGGAGTGATTTTCGTGCAGTTTGGTTATGCTGGAATGACGATTCTTACTAAATCAGCTTTGGACAAAGGAATGAGCCAATATATTTTCGTGGTTTATCGTCAAGTTGCTGCTACTCTTGTCATTGCTCCTTTTGCCATTATCTTTGAAAGGCCAGTGATCGATCAGAACTTGTTTTATACTGGAATGAAGTACACAACAGCAACCTTTGCAGCTGCCATGTGCAATGTTCTGCCAGCTTTTGTTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTTTGAAAAGAGGAAGCCAAGCAAAAATCCTAGGAACAATAGTGACAGTAGGAGGAGCCATGATTATGACCTTCATAAAAGGCCCCATGTTGAATTTACCGTGGACAAAATTACCCAATCACCCCTCTGCTTCTTCTTCATCAGCTGCTTCTCCAAATCACCAACGTACAATCATTGGCTTCCTCATGATTTCAATTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAATCGTACCCGGCCGAGCTGTCGCTTACAGCATTGATATGCTTGGTGGGCACCATTGGAGGCTCTGGGGGAGTAATATGTTCAGGGGTAACTTATTATATTCAAGGAGTGGTGATGCAAAAAAAAGGGCCTGTTTTTTTCACTGCATTCAATCCTCTGGCAATGGTTCTTGTTGCAATCATGAGCTATTTCATCTTGTCTGAGATAATGTTGTTGGGAAGAATTATTGGAGTAGTGGTCATATTCATTGGCTTGTATCTGGTTTTGTGGGGGAAAACCAAAGATCAGCCTTCATTACTTAAATCAGACTGTGATAAGATAACACATTGTGAACAACAAATGATCACTGCAAAAGATGACGCTTCGAAGACCACGACGGTTCGATCGAGTCAAGAATTCGTCGCGCTTGATGTTGCAAAAGAAGAGAGAAATTGA | 1008 | 41.57 | MESFVRLLGTTKLYFGVIFVQFGYAGMTILTKSALDKGMSQYIFVVYRQVAATLVIAPFAIIFERPVIDQNLFYTGMKYTTATFAAAMCNVLPAFVFLMAWACRLEKVNILKRGSQAKILGTIVTVGGAMIMTFIKGPMLNLPWTKLPNHPSASSSSAASPNHQRTIIGFLMISIGCICWSAFITLQAITLKSYPAELSLTALICLVGTIGGSGGVICSGVTYYIQGVVMQKKGPVFFTAFNPLAMVLVAIMSYFILSEIMLLGRIIGVVVIFIGLYLVLWGKTKDQPSLLKSDCDKITHCEQQMITAKDDASKTTTVRSSQEFVALDVAKEERN | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8564497 | 8568597 | - | Lsi04G008740.1 | Lsi04g00874 | 660923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 66 | 213 | - | - | |
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 214 | 292 | - | - | |
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 9 | 64 | - | - | |
Lsi04g00874 | 335 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 134 | - | - | |
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 66 | 213 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 214 | 292 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi04g00874 | 335 | PANTHER | WAT1-RELATED PROTEIN | 9 | 64 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi04g00874 | 335 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 214 | 285 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g01665 | Lsi04g00874 | CCT | |
Lsi02g01665 | Lsi04g00874 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00874 | Lsi-Chr4:8564497 | Lsi04g02384 | Lsi-Chr4:30985937 | 7.01E-92 | dispersed | |
Lsi04g00873 | Lsi-Chr4:8539635 | Lsi04g00874 | Lsi-Chr4:8564497 | 2.48E-159 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00874 | - | - | bhj:120081745 | 530.406 |