Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00880 ATGGCAGATTCCGAGGACATTCAGCCTCTTGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACAGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTAGGTGATGAGGCTCAATCCAAACGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGTAATTGGGATGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAACTTCGTGTTGCCCCCGAGGAGCACCCAGTTCTCCTAACAGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATCGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGATATTCTTTCACCACAACTGCAGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATCACCCTTGATTATGAACAGGAGATGGAAACATCCAAGACCAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATCACCATCGGTGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCCTCCATGATCGGGATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCTATCATGAAATGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCACCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCAGAATACGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1134 46.65 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYITLDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8665301 8667245 - Lsi04G008800.1 Lsi04g00880 660929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00880 377 Pfam Actin 5 377 IPR004000 -
Lsi04g00880 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lsi04g00880 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lsi04g00880 377 PANTHER ACTIN 1 376 IPR004000 -
Lsi04g00880 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lsi04g00880 377 Gene3D - 10 371 - -
Lsi04g00880 377 Gene3D - 140 340 - -
Lsi04g00880 377 PANTHER ACTIN-97 1 376 - -
Lsi04g00880 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lsi04g00880 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lsi04g00880 377 PRINTS Actin signature 51 62 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 238 254 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 63 85 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 142 161 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 28 37 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 117 130 IPR004000 -
Lsi04g00880 377 SMART actin_3 7 377 IPR004000 -
Lsi04g00880 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lsi04g00880 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00880 K10355 ACTF; actin, other eukaryote - csv:101220611 749.584
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00412 Lsi04g00880 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01130 Lsi-Chr1:9427824 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi01g01425 Lsi-Chr1:12390072 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi02g01634 Lsi-Chr2:22218446 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi03g00412 Lsi-Chr3:4697435 Lsi04g00880 Lsi-Chr4:8665301 7.84E-89 dispersed
Lsi04g00880 Lsi-Chr4:8665301 Lsi10g00709 Lsi-Chr10:9906107 0 dispersed
Lsi04g00892 Lsi-Chr4:8886235 Lsi04g00880 Lsi-Chr4:8665301 8.91E-13 transposed
Lsi10g01374 Lsi-Chr10:17888505 Lsi04g00880 Lsi-Chr4:8665301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g295 Blo04g00108 . . . . . . . Cmo04g00222 Cmo04g01263 Cma04g01189 Cma04g00220 Car04g01093 . . . Cpe01g00187 . . . . . . . Cla07g00303 Cam07g0320 Cec07g0364 Cco07g0325 Clacu07g0312 Cmu07g0369 Cre07g0679 . . . . Lsi03g00412 . Chy10g00547 Cme10g00888 . . . Bda15g00357 . . . . . . Cmo15g00397 . Cma15g00386 . Car15g00367 Cpe01g01096 . . . . . . . . . . . . . . . Lsi04g00880 Csa05g00706 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.4e-213 738.8
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.4e-213 738.0
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 5.3e-213 736.9
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.6e-212 734.6
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT2G37620 94.0 3.2e-210 727.6
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT2G37620 78.2 3.8e-203 704.1
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.1e-200 693.7
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT2G37620 97.1 1.1e-197 686.0
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 4.1e-213 737.3
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT5G59370 95.1 5.9e-212 733.4
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 6.5e-211 729.9
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.2e-210 727.6
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT5G59370 78.4 3.2e-202 701.0
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 6.9e-197 683.3
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-195 679.5
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.8e-213 738.4
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.3e-213 736.9
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G46520 95.3 2.6e-212 734.6
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.9e-211 731.1
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G46520 78.6 1.4e-202 702.2
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.1e-197 684.5
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G46520 97.1 4.5e-196 680.6
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 742.3
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 6.3e-214 740.0
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.0e-213 736.1
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.0e-212 734.9
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G12110 94.3 5.0e-211 730.3
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G12110 78.4 1.7e-203 705.3
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G12110 96.8 5.3e-197 683.7
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.6e-209 723.8
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.7e-208 719.9
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 8.7e-208 719.5
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 3.3e-207 717.6
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT3G18780 90.9 7.4e-207 716.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT3G18780 74.5 9.1e-197 682.9
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.5e-196 680.6
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT3G18780 92.8 8.8e-192 666.4
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.3e-208 721.5
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.0e-208 721.1
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT1G49240 91.1 2.5e-207 718.0
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 7.4e-207 716.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT1G49240 74.7 3.1e-197 684.5
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.5e-196 682.2
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT1G49240 92.8 8.8e-192 666.4
Lsi10g00709 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.9e-217 749.6
Lsi03g00810 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.1e-214 741.5
Lsi04g00880 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.8 9.0e-213 736.1
Lsi10g01374 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 735.7
Lsi02g01634 . 1 384 Cytoskeleton Gene Families AT5G09810 93.8 9.3e-210 726.1
Lsi01g01130 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 2.9e-203 704.5
Lsi03g01737 . 96 562 Cytoskeleton Gene Families AT5G09810 77.9 3.2e-202 701.0
Lsi01g01425 . 7 354 Cytoskeleton Gene Families AT5G09810 96.6 2.6e-196 681.4
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 3.8e-57 217.6
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.4e-56 213.8
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT2G19760 68.9 1.0e-54 209.5
Lsi07g00531 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 73.6 3.9e-54 207.6
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT2G19760 73.3 5.1e-54 207.2
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT4G29350 75.9 3.2e-56 214.5
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.8 3.2e-56 214.5
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT4G29350 69.6 3.9e-54 207.6
Lsi07g00531 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.5e-53 204.9
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT4G29350 71.8 4.8e-52 200.7
Lsi11g00217 . 1 92 Cytoskeleton Gene Families AT5G56600 73.9 4.2e-38 154.1
Lsi11g00216 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.6e-65 243.4
Lsi02g02980 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 7.0e-59 223.4
Lsi04g02319 . 45 175 Cytoskeleton Gene Families AT4G29340 71.6 7.5e-53 203.4
Lsi11g00217 . 1 148 Cytoskeleton Gene Families AT4G29340 63.6 9.8e-53 203.0
Lsi07g00531 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 67.9 6.4e-52 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00880 Lsi_Chr04 FPKM 2.650256 2.884196 3.9975 4.331066 0.9883 0.630949 0.933779 0.0 0.0 0.071733