Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00880 ATGGCAGATTCCGAGGACATTCAGCCTCTTGTATGTGATAATGGAACGGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATTGTAGGTCGTCCTCGCCACACAGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTAGGTGATGAGGCTCAATCCAAACGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGTAATTGGGATGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAACTTCGTGTTGCCCCCGAGGAGCACCCAGTTCTCCTAACAGAGGCTCCTCTTAACCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACTTTCAATACTCCAGCCATGTATGTTGCCATTCAAGCTGTTCTGTCCTTGTATGCAAGTGGTCGTACAACTGGTATCGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAAGGGTATGCTCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGATATTCTTTCACCACAACTGCAGAGCGTGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATCACCCTTGATTATGAACAGGAGATGGAAACATCCAAGACCAGCTCGTCCGTTGAAAAGAGCTACGAATTGCCTGATGGACAGGTGATCACCATCGGTGCAGAGAGATTCAGATGTCCCGAAGTTCTTTTCCAACCCTCCATGATCGGGATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCTATCATGAAATGTGATGTGGATATCAGGAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATCTCCGCCCTTGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCACCACCGGAGAGAAAGTACAGTGTCTGGATCGGAGGATCCATCTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAAGCAGAATACGATGAATCTGGACCGTCGATCGTGCACAGGAAATGCTTCTAA 1134 46.65 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYITLDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8665301 8667245 - Lsi04G008800.1 Lsi04g00880 660929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00880 377 Pfam Actin 5 377 IPR004000 -
Lsi04g00880 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lsi04g00880 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lsi04g00880 377 PANTHER ACTIN 1 376 IPR004000 -
Lsi04g00880 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lsi04g00880 377 Gene3D - 10 371 - -
Lsi04g00880 377 Gene3D - 140 340 - -
Lsi04g00880 377 PANTHER ACTIN-97 1 376 - -
Lsi04g00880 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lsi04g00880 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lsi04g00880 377 PRINTS Actin signature 51 62 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 238 254 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 63 85 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 142 161 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 28 37 IPR004000 -
Lsi04g00880 377 PRINTS Actin signature 117 130 IPR004000 -
Lsi04g00880 377 SMART actin_3 7 377 IPR004000 -
Lsi04g00880 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lsi04g00880 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00412 Lsi04g00880 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01130 Lsi-Chr1:9427824 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi01g01425 Lsi-Chr1:12390072 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi02g01634 Lsi-Chr2:22218446 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi03g00412 Lsi-Chr3:4697435 Lsi04g00880 Lsi-Chr4:8665301 7.84E-89 dispersed
Lsi04g00880 Lsi-Chr4:8665301 Lsi10g00709 Lsi-Chr10:9906107 0 dispersed
Lsi04g00892 Lsi-Chr4:8886235 Lsi04g00880 Lsi-Chr4:8665301 8.91E-13 transposed
Lsi10g01374 Lsi-Chr10:17888505 Lsi04g00880 Lsi-Chr4:8665301 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00880 K10355 - csv:101220611 749.584