Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00882 ATGGTTTTTCCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCACCAAACGGGAGGAAATGATATTGCAGAGGATTCTGGTCAAGTTTTATTACCTCCACCACCTGGGAGTGGGGGAGGTGGCGATGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCAAAGATTCCGCAGCCGGAGGCTGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGCCGGTACTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTGGGTGGTGGCTGTCGGAGGAACAAGAGGACCAAATCCCGGAATCGATCGAAGTCTCCGGCAGCCAGTGAACGGCAATTATTAGGTGGATCAGCTAATTCTACTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCAGCCACAAGCTCCTCCAACAAGCGGTGGCTCCACCGCGGGAGGAGTGGATGTTCATGAATTTCATGGTGACCATTGGAGATCACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAGCCACCCGAAGGCGCCATGACTCGGTATAATCTCGGGGGGTTCTCGAGATTAGGGATTGAAAACGACATAGGAATTACGACGGAGGCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTCGGTGGCGGTGGCGGAAGCGACATTAGTGCATGGAGTGGCGGCGGCGGCGGCGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 975 50.15 MVFPSLPSYLDPPNWQPLTNHQTGGNDIAEDSGQVLLPPPPGSGGGGDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSANSTAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIQPQAPPTSGGSTAGGVDVHEFHGDHWRSQQPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGITTEAGAVKVEESKGMNLGKNFQFWVGGGGGSDISAWSGGGGGGGDLHGFSSSSASHLLRQ 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8680085 8681576 - Lsi04G008820.1 Lsi04g00882 660931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00882 324 MobiDBLite consensus disorder prediction 125 160 - -
Lsi04g00882 324 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Lsi04g00882 324 MobiDBLite consensus disorder prediction 1 57 - -
Lsi04g00882 324 MobiDBLite consensus disorder prediction 144 160 - -
Lsi04g00882 324 MobiDBLite consensus disorder prediction 12 29 - -
Lsi04g00882 324 Pfam Dof domain, zinc finger 80 134 IPR003851 GO:0003677|GO:0006355
Lsi04g00882 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 286 IPR045174 GO:0003700|GO:0006355
Lsi04g00882 324 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 286 - -
Lsi04g00882 324 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00882 - - - csv:101220381 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01364 Lsi-Chr2:18392802 Lsi04g00882 Lsi-Chr4:8680085 3.01E-68 dispersed
Lsi04g00882 Lsi-Chr4:8680085 Lsi10g01367 Lsi-Chr10:17825835 7.44E-46 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi04g00882 Lsi-Chr4:8680085 1.99E-48 wgd
Lsi02g01651 Lsi-Chr2:22311974 Lsi04g00882 Lsi-Chr4:8680085 7.83E-63 wgd
Lsi03g02101 Lsi-Chr3:32272111 Lsi04g00882 Lsi-Chr4:8680085 1.86E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25163 PF02701 zf-Dof 4.50E-32 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00882 Lsi_Chr04 FPKM 4.892084 5.62965 4.174074 3.83712 9.333037 9.506854 8.892471 4.345001 3.558367 4.185381