Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00882 | ATGGTTTTTCCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCACCAAACGGGAGGAAATGATATTGCAGAGGATTCTGGTCAAGTTTTATTACCTCCACCACCTGGGAGTGGGGGAGGTGGCGATGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCAAAGATTCCGCAGCCGGAGGCTGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGCCGGTACTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTGGGTGGTGGCTGTCGGAGGAACAAGAGGACCAAATCCCGGAATCGATCGAAGTCTCCGGCAGCCAGTGAACGGCAATTATTAGGTGGATCAGCTAATTCTACTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCAGCCACAAGCTCCTCCAACAAGCGGTGGCTCCACCGCGGGAGGAGTGGATGTTCATGAATTTCATGGTGACCATTGGAGATCACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAGCCACCCGAAGGCGCCATGACTCGGTATAATCTCGGGGGGTTCTCGAGATTAGGGATTGAAAACGACATAGGAATTACGACGGAGGCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTCGGTGGCGGTGGCGGAAGCGACATTAGTGCATGGAGTGGCGGCGGCGGCGGCGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA | 975 | 50.15 | MVFPSLPSYLDPPNWQPLTNHQTGGNDIAEDSGQVLLPPPPGSGGGGDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSANSTAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIQPQAPPTSGGSTAGGVDVHEFHGDHWRSQQPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGITTEAGAVKVEESKGMNLGKNFQFWVGGGGGSDISAWSGGGGGGGDLHGFSSSSASHLLRQ | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8680085 | 8681576 | - | Lsi04G008820.1 | Lsi04g00882 | 660931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00882 | 324 | MobiDBLite | consensus disorder prediction | 125 | 160 | - | - | |
| Lsi04g00882 | 324 | ProSitePatterns | Zinc finger Dof-type signature. | 82 | 118 | IPR003851 | GO:0003677|GO:0006355 | |
| Lsi04g00882 | 324 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Lsi04g00882 | 324 | MobiDBLite | consensus disorder prediction | 144 | 160 | - | - | |
| Lsi04g00882 | 324 | MobiDBLite | consensus disorder prediction | 12 | 29 | - | - | |
| Lsi04g00882 | 324 | Pfam | Dof domain, zinc finger | 80 | 134 | IPR003851 | GO:0003677|GO:0006355 | |
| Lsi04g00882 | 324 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 6 | 286 | IPR045174 | GO:0003700|GO:0006355 | |
| Lsi04g00882 | 324 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 6 | 286 | - | - | |
| Lsi04g00882 | 324 | ProSiteProfiles | Zinc finger Dof-type profile. | 80 | 134 | IPR003851 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01364 | Lsi-Chr2:18392802 | Lsi04g00882 | Lsi-Chr4:8680085 | 3.01E-68 | dispersed | |
| Lsi04g00882 | Lsi-Chr4:8680085 | Lsi10g01367 | Lsi-Chr10:17825835 | 7.44E-46 | dispersed | |
| Lsi01g01417 | Lsi-Chr1:12314911 | Lsi04g00882 | Lsi-Chr4:8680085 | 1.99E-48 | wgd | |
| Lsi02g01651 | Lsi-Chr2:22311974 | Lsi04g00882 | Lsi-Chr4:8680085 | 7.83E-63 | wgd | |
| Lsi03g02101 | Lsi-Chr3:32272111 | Lsi04g00882 | Lsi-Chr4:8680085 | 1.86E-65 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25163 | PF02701 | zf-Dof | 4.50E-32 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00882 | - | - | csv:101220381 | 558.91 |