Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00882 ATGGTTTTTCCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCACCAAACGGGAGGAAATGATATTGCAGAGGATTCTGGTCAAGTTTTATTACCTCCACCACCTGGGAGTGGGGGAGGTGGCGATGGTGGTGGTGTTGGAGGTGGTACTGGGTCGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCAAAGATTCCGCAGCCGGAGGCTGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGCCGGTACTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTGGGTGGTGGCTGTCGGAGGAACAAGAGGACCAAATCCCGGAATCGATCGAAGTCTCCGGCAGCCAGTGAACGGCAATTATTAGGTGGATCAGCTAATTCTACTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCAGCCACAAGCTCCTCCAACAAGCGGTGGCTCCACCGCGGGAGGAGTGGATGTTCATGAATTTCATGGTGACCATTGGAGATCACAACAACCACAACAATTCCCTCTCTTGGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAGCCACCCGAAGGCGCCATGACTCGGTATAATCTCGGGGGGTTCTCGAGATTAGGGATTGAAAACGACATAGGAATTACGACGGAGGCTGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTCGGTGGCGGTGGCGGAAGCGACATTAGTGCATGGAGTGGCGGCGGCGGCGGCGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 975 50.15 MVFPSLPSYLDPPNWQPLTNHQTGGNDIAEDSGQVLLPPPPGSGGGGDGGGVGGGTGSIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLGGSANSTAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIQPQAPPTSGGSTAGGVDVHEFHGDHWRSQQPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGITTEAGAVKVEESKGMNLGKNFQFWVGGGGGSDISAWSGGGGGGGDLHGFSSSSASHLLRQ 324
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 8680085 8681576 - Lsi04G008820.1 Lsi04g00882 660931
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00882 324 MobiDBLite consensus disorder prediction 125 160 - -
Lsi04g00882 324 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Lsi04g00882 324 MobiDBLite consensus disorder prediction 1 57 - -
Lsi04g00882 324 MobiDBLite consensus disorder prediction 144 160 - -
Lsi04g00882 324 MobiDBLite consensus disorder prediction 12 29 - -
Lsi04g00882 324 Pfam Dof domain, zinc finger 80 134 IPR003851 GO:0003677|GO:0006355
Lsi04g00882 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 286 IPR045174 GO:0003700|GO:0006355
Lsi04g00882 324 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 286 - -
Lsi04g00882 324 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01364 Lsi-Chr2:18392802 Lsi04g00882 Lsi-Chr4:8680085 3.01E-68 dispersed
Lsi04g00882 Lsi-Chr4:8680085 Lsi10g01367 Lsi-Chr10:17825835 7.44E-46 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi04g00882 Lsi-Chr4:8680085 1.99E-48 wgd
Lsi02g01651 Lsi-Chr2:22311974 Lsi04g00882 Lsi-Chr4:8680085 7.83E-63 wgd
Lsi03g02101 Lsi-Chr3:32272111 Lsi04g00882 Lsi-Chr4:8680085 1.86E-65 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25163 PF02701 zf-Dof 4.50E-32 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00882 - - csv:101220381 558.91