Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00889 ATGTCATCTTCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTACTGCTACTACTACCACTACGTTATCTCATCAACACCTGCAGCAGCAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAGCTCTGTTATGTCCATTGCAATATTTGTGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGCGATGTGGACACTGCACGAATTTGCTGCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCTCCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTCATCAATCAATTTGGAACTACTACTAATAATTTTGGAATGTCATCTCGAGGAGTTACTGATGAGCTTCCTAGGCCACCCGTCATCAACAGACCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGACCGCTCATGCTACTTTTTACGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAGCACGGCAGCGCTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTAAAATGCGCTAACGATCCGCAGTGGTGCCATTCCGGCAGTCCATCGATTTTCATCACAGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGAAAACAAGGAGGAATAAGATTCACAATCAACGGCTTCCGCTACTTCAACTTGATTCTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGCAAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCATTTTGGTTGGTCAGTCACTCTCTTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAATATCGTCCCTTCCAATTGGCAATTTGGTCAGACTTTCACCGGCAAGAATTTCAGGGTTTAA 1173 49.36 MSSSSSSSSSPTSTTTTATTTTTLSHQHLQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGTTTNNFGMSSRGVTDELPRPPVINRPRIPGVYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLILITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8841940 8848416 - Lsi04G008890.1 Lsi04g00889 660938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 279 295 IPR007118 GO:0005576
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 371 385 IPR007118 GO:0005576
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 163 178 IPR007118 GO:0005576
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 181 199 IPR007118 GO:0005576
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 203 221 IPR007118 GO:0005576
Lsi04g00889 390 PRINTS Expansin/Lol pI family signature 333 347 IPR007118 GO:0005576
Lsi04g00889 390 Gene3D - 152 292 IPR036908 -
Lsi04g00889 390 PANTHER EXPANSIN-A15 152 389 IPR002963 GO:0009664
Lsi04g00889 390 MobiDBLite consensus disorder prediction 1 33 - -
Lsi04g00889 390 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 306 385 IPR007117 -
Lsi04g00889 390 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 182 296 IPR007112 -
Lsi04g00889 390 SMART dpbb_1 199 286 IPR007112 -
Lsi04g00889 390 PRINTS Expansin signature 235 245 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 221 232 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 295 307 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 307 328 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 254 271 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 371 387 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 194 208 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 271 284 IPR002963 GO:0009664
Lsi04g00889 390 PRINTS Expansin signature 342 363 IPR002963 GO:0009664
Lsi04g00889 390 SUPERFAMILY PHL pollen allergen 293 385 IPR036749 -
Lsi04g00889 390 Pfam YABBY protein 41 159 IPR006780 GO:0007275
Lsi04g00889 390 PANTHER EXPANSIN-A4 152 389 - -
Lsi04g00889 390 Pfam Expansin C-terminal domain 297 374 IPR007117 -
Lsi04g00889 390 Pfam Lytic transglycolase 199 286 IPR009009 -
Lsi04g00889 390 Gene3D - 296 388 IPR036749 -
Lsi04g00889 390 SUPERFAMILY Barwin-like endoglucanases 163 314 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00889 Lsi-Chr4:8841940 Lsi11g00969 Lsi-Chr11:15332481 1.39E-118 dispersed
Lsi07g01007 Lsi-Chr7:14544693 Lsi04g00889 Lsi-Chr4:8841940 1.24E-87 dispersed
Lsi07g01008 Lsi-Chr7:14568170 Lsi04g00889 Lsi-Chr4:8841940 7.76E-90 dispersed
Lsi07g01331 Lsi-Chr7:19473302 Lsi04g00889 Lsi-Chr4:8841940 7.16E-23 dispersed
Lsi09g00397 Lsi-Chr9:4170250 Lsi04g00889 Lsi-Chr4:8841940 5.20E-82 dispersed
Lsi09g00897 Lsi-Chr9:10675872 Lsi04g00889 Lsi-Chr4:8841940 4.01E-87 dispersed
Lsi01g01287 Lsi-Chr1:11126023 Lsi04g00889 Lsi-Chr4:8841940 1.40E-112 transposed
Lsi01g01430 Lsi-Chr1:12459638 Lsi04g00889 Lsi-Chr4:8841940 1.65E-63 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi04g00889 Lsi-Chr4:8841940 8.26E-163 wgd
Lsi02g01625 Lsi-Chr2:22146003 Lsi04g00889 Lsi-Chr4:8841940 4.48E-84 wgd
Lsi02g01353 Lsi-Chr2:18139244 Lsi04g00889 Lsi-Chr4:8841940 2.50E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25164 PF04690 YABBY 8.70E-28 CL0114 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00889 - - csv:101218950 503.442