Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00900 TGTCATCATATAATTGAGACAATGACAGGCCTTAACTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTCTTTGGTGCTAGTAATGTCTCCAAGCTTCTTTTACATCTCCCCATGTATATCCGAAGCCACGCCGCCATTACTATCGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGCGTTGCGCATATCTTCGCATTACAGCAAGAGGTCGTGAGCTTGCAGGAGGAGATAGAAGTATTGGGGAGCCAAATAGCAAACTTCGCCGCTACCGGTGGGAGCGTTGTGGAGGTTGAGAATCCATTTATAGATCAACTTCAAGTCTCACAGCAGCTGAATGATTTTGGGATGATGAACACAAATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAATGTCCAAAATGATAATAATAATGGTCAAATGATGTCTCCATTGTTTTGTTTAGGGGAAGAAGATCATGGGGTTTTTGGGTTTTGCAACTCAAATAATTTTGTTGAGAGATCAGCCTTTGATGTTTCAGTTGAGGAGAATTTTGTTGGTTATCCATGGGTAGTTGGATGA 687 41.19 CHHIIETMTGLNSSSSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMYIRSHAAITIAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEVLGSQIANFAATGGSVVEVENPFIDQLQVSQQLNDFGMMNTNDYQNELLSELPYQSFDNVQNDNNNGQMMSPLFCLGEEDHGVFGFCNSNNFVERSAFDVSVEENFVGYPWVVG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9058399 9059312 + Lsi04G009000.1 Lsi04g00900 660949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00900 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 8 183 - -
Lsi04g00900 228 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Lsi04g00900 228 Coils Coil 99 119 - -
Lsi04g00900 228 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Lsi04g00900 228 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00900 Lsi-Chr4:9058399 Lsi05g01004 Lsi-Chr5:17507404 5.15E-46 dispersed
Lsi04g00900 Lsi-Chr4:9058399 Lsi09g01900 Lsi-Chr9:27833481 5.49E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25165 PF03195 LOB 1.90E-32 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00900 K13945 - csv:101204875 386.726