Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00900 | TGTCATCATATAATTGAGACAATGACAGGCCTTAACTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTCTTTGGTGCTAGTAATGTCTCCAAGCTTCTTTTACATCTCCCCATGTATATCCGAAGCCACGCCGCCATTACTATCGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGCGTTGCGCATATCTTCGCATTACAGCAAGAGGTCGTGAGCTTGCAGGAGGAGATAGAAGTATTGGGGAGCCAAATAGCAAACTTCGCCGCTACCGGTGGGAGCGTTGTGGAGGTTGAGAATCCATTTATAGATCAACTTCAAGTCTCACAGCAGCTGAATGATTTTGGGATGATGAACACAAATGATTATCAAAATGAGCTGCTTTCTGAGTTGCCCTACCAAAGTTTTGATAATGTCCAAAATGATAATAATAATGGTCAAATGATGTCTCCATTGTTTTGTTTAGGGGAAGAAGATCATGGGGTTTTTGGGTTTTGCAACTCAAATAATTTTGTTGAGAGATCAGCCTTTGATGTTTCAGTTGAGGAGAATTTTGTTGGTTATCCATGGGTAGTTGGATGA | 687 | 41.19 | CHHIIETMTGLNSSSSSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMYIRSHAAITIAYEALERMRDPTYGCVAHIFALQQEVVSLQEEIEVLGSQIANFAATGGSVVEVENPFIDQLQVSQQLNDFGMMNTNDYQNELLSELPYQSFDNVQNDNNNGQMMSPLFCLGEEDHGVFGFCNSNNFVERSAFDVSVEENFVGYPWVVG | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9058399 | 9059312 | + | Lsi04G009000.1 | Lsi04g00900 | 660949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00900 | 228 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 33 | 8 | 183 | - | - | |
Lsi04g00900 | 228 | ProSiteProfiles | LOB domain profile. | 18 | 120 | IPR004883 | - | |
Lsi04g00900 | 228 | Coils | Coil | 99 | 119 | - | - | |
Lsi04g00900 | 228 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 116 | IPR004883 | - | |
Lsi04g00900 | 228 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 8 | 183 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00900 | Lsi-Chr4:9058399 | Lsi05g01004 | Lsi-Chr5:17507404 | 5.15E-46 | dispersed | |
Lsi04g00900 | Lsi-Chr4:9058399 | Lsi09g01900 | Lsi-Chr9:27833481 | 5.49E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25165 | PF03195 | LOB | 1.90E-32 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00900 | K13945 | - | csv:101204875 | 386.726 |