Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00903 ATGGGGTTTTATCGATCTGGGTTTTGTTCTATTGAAGTTGGAAAGAAGAAAGAACCTGCAGCAGCGAGAAGAAGAAATATAGAAGAAGAAATGGCGAATCGATGGTGGGCTGAAAATATACCCACCACCACGGACAGCAGCACCAGCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCTGATGAAGAGAACAACTCCGGTAGCCATGAGAGAGCCGAGCCAGGCACCAGTTCAAGCACGCGCCGCCCTCGTGGCCGGCCGCCGGGATCTAAGAACAAGCCAAAGCCACCGGTGGTTGTCACGAAGGAGAGCCCCGATGCCCTCCGGAGCCACGTTTTGGAAATCGGTAGCGGCACCGACATCGTTGAAAGCATCTCCAACTTTGCCCAGCGCCGGCAACGAGGAGTTTCAGTTCTTAGTGGAAATGGGGTTGTCGCCAATGTTACTCTCCGGCATCCGGCAGCTCCTGGCGGCGTTATTACGCTACAGGGCCGATTCGATATATTGTCGCTCTCTGGTGCTTTTTTGCCTGCCCCAGCTCCGCCGGGTGCTACTGGGTTAACTGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTCGGTGCACTCGTTGCAACCGGTCCAGTTATCGTCATCGCTGCCACTTTCACCAATGCGACATTCGAACGGCTGCCGCTCGAGGACGAGGAGGTGGCCGCAGGAGACAAGTCTGGAACTAGCCAGAACAATTCAACATCTCAGAGCATGGGGGAGCAACAGCAACAGCAACAGCAGCAACAACAGCAACAGCAGCCTTCAATGGGAGTTTACAATATGGGTCCAAATTTGGTGCCAAATGGTCAGGTTTCTTCACATGATGTGTTTTGGAGTCCTCCTAGAGCCCCACCTCCATTTTAA 918 53.59 MGFYRSGFCSIEVGKKKEPAAARRRNIEEEMANRWWAENIPTTTDSSTSNPYSTPLKQSLEAADEENNSGSHERAEPGTSSSTRRPRGRPPGSKNKPKPPVVVTKESPDALRSHVLEIGSGTDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGGVITLQGRFDILSLSGAFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGALVATGPVIVIAATFTNATFERLPLEDEEVAAGDKSGTSQNNSTSQSMGEQQQQQQQQQQQQQPSMGVYNMGPNLVPNGQVSSHDVFWSPPRAPPPF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9064455 9065603 - Lsi04G009030.1 Lsi04g00903 660952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00903 305 Gene3D - 111 240 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 16 32 - -
Lsi04g00903 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 304 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 242 293 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 73 88 - -
Lsi04g00903 305 CDD DUF296 112 195 IPR005175 -
Lsi04g00903 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 225 IPR005175 -
Lsi04g00903 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 304 IPR014476 GO:0003680
Lsi04g00903 305 ProSiteProfiles PPC domain profile profile. 108 246 IPR005175 -
Lsi04g00903 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 238 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 10 108 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 237 305 - -
Lsi04g00903 305 MobiDBLite consensus disorder prediction 37 65 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00361 Lsi04g00903 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00903 Lsi-Chr4:9064455 Lsi05g01697 Lsi-Chr5:24537270 5.41E-75 dispersed
Lsi03g00361 Lsi-Chr3:4260949 Lsi04g00903 Lsi-Chr4:9064455 1.19E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00903 - - csv:101217530 410.994