Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00924 ATGGGCACATTTGCTCCAGAAGCTCTACTCCACAGCTACAAAAGAAGTTTCAATGGATTCGTGGTGAAGCTTACCGAAGAAGAAGCTCAAAAGATTTCTGCTAAGGAGGGTGTTGTCTCTGTGTTTCCAAATGGAAAGAAACATCTTCATACAACAAGATCATGGGATTTCATGGGGTTTACTAAAAATGTTCCTCGTGTAAAGCAAGTTGAAAGCAACATAGTTGTCGGAGTTTTGGACTCTGGAATATGGCCAGAGTCTCCTAGCTTTAGTGATGTAGGCTATGGCCCTCCACCCGCTAAATGGAAGGGCACCTGCCAAACTTCTGCCAACTTTCGGTGTAATAGAAAAATCATTGGAGCTCGAGCATATCGTAGCGACAATTTTTTTCCTCCGGAAGATATTAAAAGTCCAAGAGATTCAGACGGTCATGGGACACACACTGCATCGACAGTAGCGGGTGGTCTCGTCAATCAAGCAAGTTTGTACGGTCTTGCACTCGGCACAGCTAGAGGAGGGGTTCCTTCTGCACGTATTGCTGTGTACAAGATATGTTGGTCCGATGGGTGCTACGATGCTGACATTCTTGCTGCATTCGATGACGCAATCGCCGACGGTGTCGATATCATATCTCTTTCAGTTGGTGGGAACAAACCCAAATTTTGCTCCAAAAACTCAGTGGATCGCAACATGGTGAAGGGAAAAATCCTTCTTTGTGACTCTATATTGGCCCCTGCAACATTTGCTTCCTTCAATGGCGCAGTGGGTGTTGTTATGAATGATGCTGGGGTGAAGGATAATGCAAGATCCTATCCCTTGCCTTCCTCCTACCTCGACACGGTGGCCGGTGCCAACCCGGATTTGACTGCCCCAGGAGTTGAAATTCTTGCTGCATGGTCTCCAATCGCATCGGTCTCCAGCGGAGTTAGAGATTCGAGGACGACGCTCTATAATATAATCTCGGGAACATCGATGTCTTGCCCACATGCCACTGCAGCTGCTGTGTATGTGAAAACATTCCATCCCACGTGGTCTCCCGCTGCCATTAAATCAGCTCTCATGACAACCGCAACTCCCTTGAATGTCAAGCTCAATCCTCAAGCAGAGTTTGCATATGGGTCTGGCCACATCAACCCACTCAAGGCAGTACATCCAGGATTGTTGTACGATGCATACGAAAGCGATTACGTTAGATTCTTGTGTGGCCAAGGTTACACCACCGCCATGGTTCGCCGCCTCTCAGGCGACAACAGTGCTTGTACTCGTGCCAACTCCGGCCGAGTTTGGGATCTAAACTATCCTTCCTTTGCCCTTTCTTCGACCAATCCACAATCCTTCAACCAATTCTTCACAAGAACTGTCACAAACGTTGGCTCGAAAGTTTCGACATATAGAGCTAAGGTTGTTGGCGCCCCACGAGGCCTTACAATCACAGTGAACCCTCCGGTTCTGTCATTCAATGCCATTGGACAGAAGAAATCTTTCACATTGACAATTCGTGGATCTGTCAGTCAATCCCTAGTCTCTGCTTCATTGGTGTGGACCGATGGTTATCACAATGTGAGAAGCCCTATCACAGTATTTGTTGTGGATACAGCTTAA 1602 47.25 MGTFAPEALLHSYKRSFNGFVVKLTEEEAQKISAKEGVVSVFPNGKKHLHTTRSWDFMGFTKNVPRVKQVESNIVVGVLDSGIWPESPSFSDVGYGPPPAKWKGTCQTSANFRCNRKIIGARAYRSDNFFPPEDIKSPRDSDGHGTHTASTVAGGLVNQASLYGLALGTARGGVPSARIAVYKICWSDGCYDADILAAFDDAIADGVDIISLSVGGNKPKFCSKNSVDRNMVKGKILLCDSILAPATFASFNGAVGVVMNDAGVKDNARSYPLPSSYLDTVAGANPDLTAPGVEILAAWSPIASVSSGVRDSRTTLYNIISGTSMSCPHATAAAVYVKTFHPTWSPAAIKSALMTTATPLNVKLNPQAEFAYGSGHINPLKAVHPGLLYDAYESDYVRFLCGQGYTTAMVRRLSGDNSACTRANSGRVWDLNYPSFALSSTNPQSFNQFFTRTVTNVGSKVSTYRAKVVGAPRGLTITVNPPVLSFNAIGQKKSFTLTIRGSVSQSLVSASLVWTDGYHNVRSPITVFVVDTA 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9472654 9479077 + Lsi04G009240.1 Lsi04g00924 660973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00924 533 Gene3D Peptidase S8/S53 domain 285 396 IPR036852 GO:0004252|GO:0006508
Lsi04g00924 533 Gene3D Peptidase S8/S53 domain 73 219 IPR036852 GO:0004252|GO:0006508
Lsi04g00924 533 Pfam Peptidase inhibitor I9 6 50 IPR010259 -
Lsi04g00924 533 CDD Peptidases_S8_3 47 358 IPR034197 -
Lsi04g00924 533 Pfam Subtilase family 72 375 IPR000209 GO:0006508|GO:0008236
Lsi04g00924 533 PANTHER PUTATIVE-RELATED 285 528 - -
Lsi04g00924 533 PANTHER PUTATIVE-RELATED 5 218 - -
Lsi04g00924 533 SUPERFAMILY Subtilisin-like 52 384 IPR036852 GO:0004252|GO:0006508
Lsi04g00924 533 ProSiteProfiles Serine proteases, subtilase domain profile. 54 383 - -
Lsi04g00924 533 PANTHER PUTATIVE-RELATED 219 284 - -
Lsi04g00924 533 Pfam Fibronectin type-III domain 430 527 IPR041469 -
Lsi04g00924 533 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 285 528 IPR045051 -
Lsi04g00924 533 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 5 218 IPR045051 -
Lsi04g00924 533 ProSitePatterns Serine proteases, subtilase family, serine active site. 322 332 IPR023828 -
Lsi04g00924 533 PRINTS Subtilisin serine protease family (S8) signature 140 153 IPR015500 -
Lsi04g00924 533 PRINTS Subtilisin serine protease family (S8) signature 71 90 IPR015500 -
Lsi04g00924 533 PRINTS Subtilisin serine protease family (S8) signature 321 337 IPR015500 -
Lsi04g00924 533 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 219 284 IPR045051 -
Lsi04g00924 533 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 2 50 IPR037045 -
Lsi04g00924 533 Gene3D - 400 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00917 Lsi-Chr4:9281448 Lsi04g00924 Lsi-Chr4:9472654 1.06E-103 dispersed
Lsi04g00922 Lsi-Chr4:9396647 Lsi04g00924 Lsi-Chr4:9472654 9.06E-165 dispersed
Lsi04g00924 Lsi-Chr4:9472654 Lsi04g00918 Lsi-Chr4:9334334 6.69E-96 dispersed
Lsi04g00923 Lsi-Chr4:9432713 Lsi04g00924 Lsi-Chr4:9472654 6.94E-98 tandem
Lsi04g00924 Lsi-Chr4:9472654 Lsi04g00925 Lsi-Chr4:9510161 3.27E-82 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00924 - - csv:101215626 555.444