Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00925 ATGAATGAAGTTGTATCTGTGTTTCCAAGTGAAAAAAAACAGCTTCATACCACAAGATCATGGGATTTCATGGGTTTCTTCCAACAAACTCGTAGAACCAACTTGGAGTCCGATTTGGTCGTCGGAATGTTGGATACTGGGATTTGGCCGGAATCTCAAAGCTTTTCCGATGAAGGCTTTGGCCCGCCGCCGCTTAAATGGAAAGGCCAATGCCAACCCTTTTCCAATTTCACCTGCAACAATAAAATAATCGGAGCTCGATTCTTCCGGAGCGAGCCTCTCACCGGAGCCGATATTCTTTCTCCGAGAGATACAGAAGGCCATGGAACCCACACTTCCTCCACCGCTGCTGGTAATTTTGTATCCAGCGCCAGCCTCTCGGGCCTCGCCGTCGGCACCGCTCGGGGCGGCGTTCCCTCCGCTCGCATCGCCGTCTACAAGATCTGCTGGTCCGATGGTTGCTTCGACGCTGACATCCTCGCAGCTTTCGACAGTGCAATCGCTGATAGAGTCGATATCATCTCCATTTCCGTCGGAGGTTTTATCGCCAAGAATTACTTCAACGATTCAATCGCTATTGGGGCTTTTCACGCAATGAAGAATGGGATTTTGACTTCAAATTCCGGTGGCAATTCTGGCCCTAGCCTTGGTAGTATCACGAATGTTTCTCCATGGTCGTTATCGGTGGCTGCTAGCACCATCGATAGGAAGTTTGTGACTAATGTGAAGTTGGGTAATGGAGAATCCTTTCAGGGGATCTCTGTGAACACCTTCCAACTTGGAGATGAGTTATTTCCACTTATATATGCTGGCGATGCTCCTAATATAACTGCAGGTTTCAATGGATCATTATCAAGGTTCTGCTTCCCAGGTTCTTTGGACGTGGACAAAGTTCAGGGGAAGATTGTTTTATGCGATGAGATTGGTGACGGAGAACCAGCTTTGAGCAGTGGTGCGGTTGGTACAATAATGCAAGATGATAGCCACCAAGATGTTGCCTTTCTTTTCCCCCTACCTGTTTCCTTGATAGACTTGAACGCTGGAAAGAATGTTTTCCAATACCTGAGATCAACCAGCAATCCGGTAGCTACCATAGAAAAGAGTACTACCATTGAGGATCTGTCAGCTCCATCTGTAGTTTCCTTCTCATCAAGGGGTCCTAATATAGTTACGCTGGACATTCTCAAGCCTGATTTGGCAGCACCAGGAGTGGATATACTAGCATCTTGGTCTGAAGGCACAACGATCACAGGTTTAGAAGGGGATAACCGAATAGCTCCATTTAACATAATCTCTGGCACATCCATGGCTTGCCCACATGCAACAGGAGCAGCTGCCTATGTCAAATCCTTCCACCCAACTTGGTCTCCAGCTGCTATTAAGTCAGCACTTATGACAACTGCTTTTCCCATGACTCCAAAGTTAAACACGGATGCTGAGTTTGCATATGGAGCAGGTCACTTAAATCCAGTTAATGCCATTAACCCCGGTTTAGTCTATGATGCTGAAGAGCTTGACTACATAAAGTTCTTATGTGGGCAAGGACATAGTGCTGAAAATCTTCATCTTGTTACCGGTGACCAAAGCAACTGTTCGGGTGTTACAAAAACAGCTGCATCAGATCTAAACTATCCATCTGTTGCTCTAGTGATCAACTCTCCAAGTCGAAGATTGATTCGTCGTGTCTACCACAGGACTGTCACAAATGTCGGGTTGCCAGTGTCAACTTATAAACCAGTTATTCAAGTTCCACCCGGGCTCAAAGTTGCAGTACGTCCTGCTACTCTTTCTTTCCGTTCTCTTGGACAAAAGATATCCTTCACTGTGACTGTGACGGCTAAAGCAGAAGTTGGTGGAAAGATGCTTTCTGGTAGCTTAACCTGGGATGATGGAGTGCATCTGGTGAGGAGCCCCATTGTTGCATTTGTTATTCCATCATCATAA 1944 46.4 MNEVVSVFPSEKKQLHTTRSWDFMGFFQQTRRTNLESDLVVGMLDTGIWPESQSFSDEGFGPPPLKWKGQCQPFSNFTCNNKIIGARFFRSEPLTGADILSPRDTEGHGTHTSSTAAGNFVSSASLSGLAVGTARGGVPSARIAVYKICWSDGCFDADILAAFDSAIADRVDIISISVGGFIAKNYFNDSIAIGAFHAMKNGILTSNSGGNSGPSLGSITNVSPWSLSVAASTIDRKFVTNVKLGNGESFQGISVNTFQLGDELFPLIYAGDAPNITAGFNGSLSRFCFPGSLDVDKVQGKIVLCDEIGDGEPALSSGAVGTIMQDDSHQDVAFLFPLPVSLIDLNAGKNVFQYLRSTSNPVATIEKSTTIEDLSAPSVVSFSSRGPNIVTLDILKPDLAAPGVDILASWSEGTTITGLEGDNRIAPFNIISGTSMACPHATGAAAYVKSFHPTWSPAAIKSALMTTAFPMTPKLNTDAEFAYGAGHLNPVNAINPGLVYDAEELDYIKFLCGQGHSAENLHLVTGDQSNCSGVTKTAASDLNYPSVALVINSPSRRLIRRVYHRTVTNVGLPVSTYKPVIQVPPGLKVAVRPATLSFRSLGQKISFTVTVTAKAEVGGKMLSGSLTWDDGVHLVRSPIVAFVIPSS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9510161 9515635 + Lsi04G009250.1 Lsi04g00925 660974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00925 647 ProSitePatterns Serine proteases, subtilase family, serine active site. 433 443 IPR023828 -
Lsi04g00925 647 PRINTS Subtilisin serine protease family (S8) signature 36 55 IPR015500 -
Lsi04g00925 647 PRINTS Subtilisin serine protease family (S8) signature 432 448 IPR015500 -
Lsi04g00925 647 PRINTS Subtilisin serine protease family (S8) signature 104 117 IPR015500 -
Lsi04g00925 647 Gene3D Peptidase S8/S53 domain 38 507 IPR036852 GO:0004252|GO:0006508
Lsi04g00925 647 Pfam Subtilase family 37 486 IPR000209 GO:0006508|GO:0008236
Lsi04g00925 647 CDD Peptidases_S8_3 13 468 IPR034197 -
Lsi04g00925 647 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 3 643 IPR045051 -
Lsi04g00925 647 Pfam Fibronectin type-III domain 541 640 IPR041469 -
Lsi04g00925 647 Gene3D - 511 643 - -
Lsi04g00925 647 Gene3D - 235 372 - -
Lsi04g00925 647 ProSiteProfiles Serine proteases, subtilase domain profile. 20 494 - -
Lsi04g00925 647 PANTHER PUTATIVE-RELATED 3 643 - -
Lsi04g00925 647 CDD PA_subtilisin_like 241 365 - -
Lsi04g00925 647 SUPERFAMILY Subtilisin-like 15 498 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00918 Lsi-Chr4:9334334 Lsi04g00925 Lsi-Chr4:9510161 0 dispersed
Lsi04g00919 Lsi-Chr4:9370053 Lsi04g00925 Lsi-Chr4:9510161 0 dispersed
Lsi04g00925 Lsi-Chr4:9510161 Lsi09g00086 Lsi-Chr9:764376 0 dispersed
Lsi04g01158 Lsi-Chr4:16550162 Lsi04g00925 Lsi-Chr4:9510161 6.55E-157 dispersed
Lsi04g00924 Lsi-Chr4:9472654 Lsi04g00925 Lsi-Chr4:9510161 3.27E-82 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00925 - - bhj:120081032 1193.33