Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00961 ATGGAGGGTAAGGAGGAAGATGTCCGATTGGGAGCCAACAAGTTCAACGAGAGGCAGCCGATTGGGACGGCGGCGCAGAGCCAAGACGACGCCAAGGACTACAAGGAGCCGCCGCCGGCACCTCTGTTCGAGCCGGAGGAGCTCACTTCATGGTCCTTTTACAGAGCTGGAATCGCCGAGTTTTTCGCGACTTTCCTCTTCCTTTACATCACCGTTTTGACCGTCATGGGTGTCGTCCGGTCGAATGAAGCCAATGGCAATACCTGTAAGACCGTTGGGATTCAGGGGATTGCTTGGGCTTTCGGCGGTATGATTTTTGCTCTGGTTTACTGTACTGCTGGAATCTCCGGTGGCCACATTAACCCGGCAGTGACTTTTGGTCTGTTTCTGGCGAGGAAACTGTCGTTGACCAGAGCGATTTTCTACATCGTGATGCAGTGCCTTGGTGCCATCTGCGGCGCCGGCGTGGTTAAGGGATTCCAACCCAAGCCCTACGAAAGGCTCGGCGGTGGAGCTAACGTTGTGAACAGTGGATACACCAAAGGGGACGGCCTTGGCGCTGAGATCGTCGGTACTTTCATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCTAAACGCAGTGCCAGAGACTCACATGTTCCGATTTTGGCACCACTACCAATTGGGTTTGCAGTGTTCTTAGTCCACTTGGCCACAATTCCGATCACCGGCACCGGCATCAACCCAGCCCGGAGTTTGGGAGCCGCCATCATCTTCAACCAGGACAAAGCCTGGGACCATCACTGGATATTCTGGGTGGGACCATTCATCGGAGCAGCATTGGCAGCTTTATACCATCAAGTGGTGATTAGAGCCATTCCCTTCAAGTCCAAGTGA 879 54.15 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPKPYERLGGGANVVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNQDKAWDHHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10060298 10061994 - Lsi04G009610.1 Lsi04g00961 661010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00961 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PANTHER AQUAPORIN PIP1-2-RELATED 1 292 - -
Lsi04g00961 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 SUPERFAMILY Aquaporin-like 46 285 IPR023271 -
Lsi04g00961 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi04g00961 292 MobiDBLite consensus disorder prediction 1 39 - -
Lsi04g00961 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Lsi04g00961 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Lsi04g00961 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00959 Lsi-Chr4:10044700 Lsi04g00961 Lsi-Chr4:10060298 0 dispersed
Lsi04g00961 Lsi-Chr4:10060298 Lsi09g00247 Lsi-Chr9:2583854 1.25E-180 dispersed
Lsi04g00960 Lsi-Chr4:10051779 Lsi04g00961 Lsi-Chr4:10060298 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00961 K09872 - csv:101215145 571.237