Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00969 ATGGCTTCCGTATATCGTGATCGGACGTCGGAATTTCGGTCACTGTTGGAGACGCTGAAGAAGATCGGCGGAGCCACATCCGACGTCAATCCAGCGCAAAATGAACCATCGGCGTCTACACCCTCCGGGTCACCGGCCTTTGCACGATCAGAATTCAGCAAAAAGGCCTCGCGTATCGGATTGGGAATCCAAGAAACCTCTCAGAAGATCGTGAGGCTCGCTCAGTTGGCGAAAAGATCATCAATGTTTGATGACCCAATCCAGGAAATACAGGAAATGACTGCTTTGATTAAGAATGATATTACATCCTTGAATGTAGCTATCACAGACTTGCAAACCATCCATAACATGGAGACAACAGAGGGGAATTATTCAGAGGATAGGGTGGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAGATGTGCTAACTACAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAAGCAAATATTTTCTGCAAATGCATCCAGAGAAAGTCCTTTTCAAAATCAACCCAAAACTGTAACACAACCTCCACCTTGGTCAAGTAATACATCTGGAAGTGCCCAATCACCCTTGTTGTCATCAAATGGAGCTCAAGTTGGGGGTCAATTAAGACGAAGGTTGGCTGTGGAGAATATGAACACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCGCTCCATAATGTGGAATCCACCATATCAGAACTCAGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGCTCCCAAAACCTAACTTCTAAAATTTTTGCTGACGATATTGTGTGGCTTTCTCCATGTCCATCAGTAGTTTACACTTATCATGAGTCTGATCGTGCTTTGAATGAAAGAAGCATATATACTGTATTGTGGGAATTTGAATTTGGCATATATCAAATTTCTGCTTGGGATTACGAATTCAATCTCAAATTCATTAAAGTTAAATTCTCCTTGTTCAACTATGTTAGAACTGTGTTTGATATCTTGAGAAACATAAACCTGGGGCATGCATATCTAAAGTAA 1140 42.37 MASVYRDRTSEFRSLLETLKKIGGATSDVNPAQNEPSASTPSGSPAFARSEFSKKASRIGLGIQETSQKIVRLAQLAKRSSMFDDPIQEIQEMTALIKNDITSLNVAITDLQTIHNMETTEGNYSEDRVVHSTAVCDDLKSRLMGATKQLQDVLTTRTENIKANESRKQIFSANASRESPFQNQPKTVTQPPPWSSNTSGSAQSPLLSSNGAQVGGQLRRRLAVENMNTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAISSQNLTSKIFADDIVWLSPCPSVVYTYHESDRALNERSIYTVLWEFEFGIYQISAWDYEFNLKFIKVKFSLFNYVRTVFDILRNINLGHAYLK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10161830 10165988 + Lsi04G009690.1 Lsi04g00969 661018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00969 379 SUPERFAMILY t-snare proteins 49 284 IPR010989 GO:0016020|GO:0016192
Lsi04g00969 379 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 284 IPR000727 -
Lsi04g00969 379 MobiDBLite consensus disorder prediction 27 47 - -
Lsi04g00969 379 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Lsi04g00969 379 PANTHER SYNTAXIN-31 4 286 - -
Lsi04g00969 379 MobiDBLite consensus disorder prediction 24 48 - -
Lsi04g00969 379 Gene3D - 48 287 - -
Lsi04g00969 379 PANTHER SYNTAXIN 4 286 IPR045242 -
Lsi04g00969 379 MobiDBLite consensus disorder prediction 165 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00969 Lsi-Chr4:10161830 Lsi08g01147 Lsi-Chr8:20112324 2.49E-68 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00969 K08490 - csv:101213786 522.702