Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00972 | ATCCAACTTCCAACTTCGAGATTGATAGTATCAGTTCAGGTTGGTTCAACAACATTCCGCCGTGTGCGGCTGCCGCCGGGGACACTCGGCCTTCCCTTGCTCGGAGAGACCCTTCAGCTTATCTCCGCCTACAAGACCGAGAACCCTGAACCCTTCATCGACGAGCGGGTCCGTAGATTTGGACCGGTTTTTACGACCCATTTGTTTGGTGAGCCGACGGTTTTCTCGGCCGATTGGGAAACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTTGAGTGTAGTTACCCCGGTTCCATTTCTAACCTACTTGGGAAGCATTCTTTGTTGCTTATGAAAGGGAGTTTACATAAGAGAATGCATTCTTTGACTATGAGCTTTGGGAATTCTTCCATTATTAGAGACCATCTTTTGGTCGATGTGGACCGCTTGATTCGGCTCAATTTGGACTCTTGGACTGGCCGGATCTTCCTCATGGAAGAAGCTAAAAAGGCACGGAGCAAAGTGGCAGAGCAATTGGGGACGGTGGTGCGGGAGCGGAGGAAAGAGAGTGAAGACGGAGTGAGGAAGAAGGACATGCTCGGAGCGCTGCTCGCCGGAGAAGATGCCCTCTCCGACGAGCAAATAGTAGATTTCTTACTGGCTTTATTGGTGGCGGGATATGAAACGACGTCAACTACCATGACGCTCGCCGTTAAGTTTCTGACGGAGACGCCGCTGGCTTTGGCCCAATTACAGGAAGAGCATGAGCAAATCAAAGCAAGAAAGAAGGAATCAGACCAACACCTCCAATGGAATGATTACAAGTCCATGCCTTTCACCCAATGTGTTGTGAATGAAACATTAAGAGTTGCCAACATAATCAGTGGGGTATTTAGGAGGGCAATGACAGACGTAAATATCAAAGGTAACTAA | 918 | 48.58 | IQLPTSRLIVSVQVGSTTFRRVRLPPGTLGLPLLGETLQLISAYKTENPEPFIDERVRRFGPVFTTHLFGEPTVFSADWETNRFILQNEEKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFGNSSIIRDHLLVDVDRLIRLNLDSWTGRIFLMEEAKKARSKVAEQLGTVVRERRKESEDGVRKKDMLGALLAGEDALSDEQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHEQIKARKKESDQHLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDVNIKGN | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10286056 | 10295419 | + | Lsi04G009720.1 | Lsi04g00972 | 661021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00972 | 305 | Coils | Coil | 243 | 263 | - | - | |
Lsi04g00972 | 305 | Pfam | Cytochrome P450 | 160 | 304 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g00972 | 305 | PANTHER | CYTOCHROME P450 26 | 166 | 304 | - | - | |
Lsi04g00972 | 305 | PANTHER | CYTOCHROME P450 26 | 16 | 165 | - | - | |
Lsi04g00972 | 305 | SUPERFAMILY | Cytochrome P450 | 18 | 304 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g00972 | 305 | PANTHER | CYTOCHROME P450 90A1 | 166 | 304 | - | - | |
Lsi04g00972 | 305 | PANTHER | CYTOCHROME P450 90A1 | 16 | 165 | - | - | |
Lsi04g00972 | 305 | Gene3D | Cytochrome P450 | 14 | 305 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00972 | Lsi-Chr4:10286056 | Lsi07g00205 | Lsi-Chr7:2230672 | 2.66E-62 | dispersed | |
Lsi04g00972 | Lsi-Chr4:10286056 | Lsi07g00564 | Lsi-Chr7:5994952 | 1.45E-64 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00972 | K09588 | - | csv:101216594 | 495.738 |