Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00972 ATCCAACTTCCAACTTCGAGATTGATAGTATCAGTTCAGGTTGGTTCAACAACATTCCGCCGTGTGCGGCTGCCGCCGGGGACACTCGGCCTTCCCTTGCTCGGAGAGACCCTTCAGCTTATCTCCGCCTACAAGACCGAGAACCCTGAACCCTTCATCGACGAGCGGGTCCGTAGATTTGGACCGGTTTTTACGACCCATTTGTTTGGTGAGCCGACGGTTTTCTCGGCCGATTGGGAAACGAACCGGTTCATTCTTCAGAATGAGGAGAAGCTTTTTGAGTGTAGTTACCCCGGTTCCATTTCTAACCTACTTGGGAAGCATTCTTTGTTGCTTATGAAAGGGAGTTTACATAAGAGAATGCATTCTTTGACTATGAGCTTTGGGAATTCTTCCATTATTAGAGACCATCTTTTGGTCGATGTGGACCGCTTGATTCGGCTCAATTTGGACTCTTGGACTGGCCGGATCTTCCTCATGGAAGAAGCTAAAAAGGCACGGAGCAAAGTGGCAGAGCAATTGGGGACGGTGGTGCGGGAGCGGAGGAAAGAGAGTGAAGACGGAGTGAGGAAGAAGGACATGCTCGGAGCGCTGCTCGCCGGAGAAGATGCCCTCTCCGACGAGCAAATAGTAGATTTCTTACTGGCTTTATTGGTGGCGGGATATGAAACGACGTCAACTACCATGACGCTCGCCGTTAAGTTTCTGACGGAGACGCCGCTGGCTTTGGCCCAATTACAGGAAGAGCATGAGCAAATCAAAGCAAGAAAGAAGGAATCAGACCAACACCTCCAATGGAATGATTACAAGTCCATGCCTTTCACCCAATGTGTTGTGAATGAAACATTAAGAGTTGCCAACATAATCAGTGGGGTATTTAGGAGGGCAATGACAGACGTAAATATCAAAGGTAACTAA 918 48.58 IQLPTSRLIVSVQVGSTTFRRVRLPPGTLGLPLLGETLQLISAYKTENPEPFIDERVRRFGPVFTTHLFGEPTVFSADWETNRFILQNEEKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFGNSSIIRDHLLVDVDRLIRLNLDSWTGRIFLMEEAKKARSKVAEQLGTVVRERRKESEDGVRKKDMLGALLAGEDALSDEQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQEEHEQIKARKKESDQHLQWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDVNIKGN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10286056 10295419 + Lsi04G009720.1 Lsi04g00972 661021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00972 305 Coils Coil 243 263 - -
Lsi04g00972 305 Pfam Cytochrome P450 160 304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00972 305 PANTHER CYTOCHROME P450 26 166 304 - -
Lsi04g00972 305 PANTHER CYTOCHROME P450 26 16 165 - -
Lsi04g00972 305 SUPERFAMILY Cytochrome P450 18 304 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00972 305 PANTHER CYTOCHROME P450 90A1 166 304 - -
Lsi04g00972 305 PANTHER CYTOCHROME P450 90A1 16 165 - -
Lsi04g00972 305 Gene3D Cytochrome P450 14 305 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00972 Lsi-Chr4:10286056 Lsi07g00205 Lsi-Chr7:2230672 2.66E-62 dispersed
Lsi04g00972 Lsi-Chr4:10286056 Lsi07g00564 Lsi-Chr7:5994952 1.45E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00972 K09588 - csv:101216594 495.738