Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00979 ATGATGAATTTACCCTCTTCGGCCGTCGCCGTCGCTGTCCTTATCCTCATCGCTATCCTTTTCCCGTTGTTGCCGGCGATCCAAGCTCTCGGTTCAGCCTCTACCCTTGCTGTCAGCTACGGCTCCCGCACTGTCTGTGGCATCGTCGCCGAGCAGCCGACCCAAAGGATTTTGTGCTTCCGTGACGGTCAAACCATTTTTATTGAACCCCATATCTCTTTCTCTGCCGTATCCGGAGGCCGGAATACCTTTTGCGGTATAAGGACCGGCGGTTACACACTCCTCTGCTGGGACTTCGACTCGACCACCGCTTCGTTTTCCCGGAGAAGACTTTACTACAACCCCACCGTTCTTCTCGAGAATCTCGCGGTCGGCGACGAGCAAATCTGCGCCACGGTGGTTGGCGCCGGCAATGTTACTTGCTGGCGAGAAGGTAACAACTCGAGAGTTGGATTTTCTTCTCTTCAATATGGTTCAATCTCTTCTGGGTATGGATTTTCTTGTGGGATTTTGAAGGGGAATCAATCTATCCGATGTTGGGGTAGAAATTCGTCGATTGCAACCGTAATCGAAAATGGGTTTCGAAATATTTCAATGTTGAGCATCGTCGCCGGTGGGTTTCATGCTTGTGGATTGAATTCCTCTGGTGGGTTGGTTTGTAAAGGGAATAACGATTTTGGGCAGTTGGATTTTCCTTCAAATTCATCCATGGGGTTCTCTGAATTAGCACTCGGCGAACGCCATAGCTGTGGGATTTTAGTCTCGAATCGATCAGTGGTTTGTTGGGGTGGCTTGGGATTTTCTGTTGATTTGATTCGAGAAACTTCTTTTGAGTTAATTTCTTCAGGATCTGATTTTGTTTGTGGTTTAACGACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATGATTCTTTTGGTCTTTCTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTCTTCAATCTTCTTGTAGTGATTGTGGGGTTTATCCTTTATCTCAAACCCTCTGTTCTAATTCTGGGAATGTCTGTAATCGCTGTTTGTTCACTGTTTCTATGCCACCGCCACCGCTACCGTCGCCTCCCCCTCCTCAGCGGTCGCCACCGCCAACGATGACGACCCCATCGCCTCCGCCGGCTGCCTTGAGAAAGGGTTTGTTGGCATTTGGTATTGTGGGCTCAGTTGGGGCCTTTGCTGGGATTTGCACAATTGTTTACTGTTTGTGGACTGGTGTTTGTTTTGGGCATAAGAAGATACATAACTCTGTTCAGCCCACCATCACTAGAGCTGCTAGCTCGAACGGTGGAACGACGACATCGAACACGAACAACAGCCCTCCGTCGCGGTCGTTGACGATACGGCGTCAAGGCTCACGGATAATGCGAAGGCAGAGGAGTGGCACCTCGTCGAAGCATGCGGATAGAGCAGAAGAATTCACTCTTGCTGAGCTTGCTATGGCTACCAATGATTTCTCTCCTGAGAACAAGATTGGTGAGGGGAGCTTCGGTGTCGTGTACCGAGGGAAACTGTACGATGGGCGAGAAGTTGCGATTAAGAGAGGCGAAACGGGGCCAAAAACTAAGAAGTTTCAGGAGAAAGAGAGTGCTTTTGATTCAGAATTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTTAGACTTGTTGGGTATTGTGAGGAGAAAGATGAGAGGCTGTTAGTTTATGAGTATATGAAAAATGGTGCACTTTACAATCATCTTCATGACAAGAACAACTTTGAGAAAGCCTGTAGTGTTATAAACTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCTAGAGGGATTGAATATCTTCACAACTATGCAGTCCCTCCCATAATCCATAGAGATATCAAATCATCCAACATTCTCCTCGACGCAAATTGGACAGCGAGAGTATCTGATTTCGGGTTGTCATTGATGAGTCCAGGGTCGGACCGTGACTACCGACCAACGAAGGCAGCTGGGACGGTTGGTTACATTGATCCTGAGTACTATGGACTGAACGTTTTGACTGCCAAGAGTGATGTATATGGGCTTGGGGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTTAAGGATGATGAACAGGGAGGAACACCGGCGAGTGTGGTTGATTATGCGGTGCCTGTGATTATGGTCGGAGAATTGGTGAAGATTTTGGATCAGAGAGTCGGGCCACCGCAAATCAACGAAGCAGAGGCGGTGGAGCTGGTGGCTTACACAGCAATGCACTGTGTGCATTTGGAAGGGAAAGACCGGCCGACGATGACCGACATTGTCGCTAATTTGGAGCGAGCTTTGAATCTCTGTGATGATAGCCATGGTAGCATCTCTAGTGGTGGAATTTTCATTGTTTCAGAGTGA 2418 47.89 MMNLPSSAVAVAVLILIAILFPLLPAIQALGSASTLAVSYGSRTVCGIVAEQPTQRILCFRDGQTIFIEPHISFSAVSGGRNTFCGIRTGGYTLLCWDFDSTTASFSRRRLYYNPTVLLENLAVGDEQICATVVGAGNVTCWREGNNSRVGFSSLQYGSISSGYGFSCGILKGNQSIRCWGRNSSIATVIENGFRNISMLSIVAGGFHACGLNSSGGLVCKGNNDFGQLDFPSNSSMGFSELALGERHSCGILVSNRSVVCWGGLGFSVDLIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSFGLSSLSLPKILPGPCLQSSCSDCGVYPLSQTLCSNSGNVCNRCLFTVSMPPPPLPSPPPPQRSPPPTMTTPSPPPAALRKGLLAFGIVGSVGAFAGICTIVYCLWTGVCFGHKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSLTIRRQGSRIMRRQRSGTSSKHADRAEEFTLAELAMATNDFSPENKIGEGSFGVVYRGKLYDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKNNFEKACSVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMSPGSDRDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDEQGGTPASVVDYAVPVIMVGELVKILDQRVGPPQINEAEAVELVAYTAMHCVHLEGKDRPTMTDIVANLERALNLCDDSHGSISSGGIFIVSE 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10429643 10432060 - Lsi04G009790.1 Lsi04g00979 661028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00979 805 ProSiteProfiles Protein kinase domain profile. 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00979 805 SUPERFAMILY Protein kinase-like (PK-like) 477 781 IPR011009 -
Lsi04g00979 805 Gene3D Transferase(Phosphotransferase) domain 1 577 794 - -
Lsi04g00979 805 SMART serkin_6 496 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00979 805 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
Lsi04g00979 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 796 IPR044815 GO:0004674
Lsi04g00979 805 MobiDBLite consensus disorder prediction 435 460 - -
Lsi04g00979 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Lsi04g00979 805 MobiDBLite consensus disorder prediction 362 384 - -
Lsi04g00979 805 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Lsi04g00979 805 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 796 - -
Lsi04g00979 805 Pfam Protein kinase domain 498 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00979 805 MobiDBLite consensus disorder prediction 362 382 - -
Lsi04g00979 805 MobiDBLite consensus disorder prediction 435 478 - -
Lsi04g00979 805 Gene3D - 71 310 IPR009091 -
Lsi04g00979 805 Gene3D Phosphorylase Kinase; domain 1 458 576 - -
Lsi04g00979 805 SUPERFAMILY RCC1/BLIP-II 73 305 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01280 Lsi-Chr2:17112593 Lsi04g00979 Lsi-Chr4:10429643 0 dispersed
Lsi04g00979 Lsi-Chr4:10429643 Lsi08g00234 Lsi-Chr8:5154164 1.35E-121 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83573 PF00069 Pkinase 2.60E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00979 - - bhj:120081574 1415.98