Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00981 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGGCGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGTACTCTTGCATTCCAATTAAGTGCACCTTGGCTATGTTATCCTAATTTGTTTGATGACTAA 411 48.91 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFDD 136
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 10489977 10491110 + Lsi04G009810.1 Lsi04g00981 661030
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00981 136 Pfam Alfin 10 122 IPR021998 GO:0006355|GO:0042393
Lsi04g00981 136 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 123 - -
Lsi04g00981 136 PANTHER CPG BINDING PROTEIN 1 123 IPR045104 GO:0006355|GO:0042393
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00981 Lsi-Chr4:10489977 Lsi05g00769 Lsi-Chr5:10818138 2.03E-37 dispersed
Lsi08g00841 Lsi-Chr8:16866771 Lsi04g00981 Lsi-Chr4:10489977 1.38E-39 transposed
Lsi03g02216 Lsi-Chr3:33171653 Lsi04g00981 Lsi-Chr4:10489977 9.04E-68 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00981 - - csv:101211934 246.899