Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00981 | ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGTGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCGGCGCTAGGGATCAATTTTGCTAGAGATGGGATGAAGCGCCGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGTACTCTTGCATTCCAATTAAGTGCACCTTGGCTATGTTATCCTAATTTGTTTGATGACTAA | 411 | 48.91 | MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERTLAFQLSAPWLCYPNLFDD | 136 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 10489977 | 10491110 | + | Lsi04G009810.1 | Lsi04g00981 | 661030 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00981 | 136 | Pfam | Alfin | 10 | 122 | IPR021998 | GO:0006355|GO:0042393 | |
| Lsi04g00981 | 136 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 1 | 123 | - | - | |
| Lsi04g00981 | 136 | PANTHER | CPG BINDING PROTEIN | 1 | 123 | IPR045104 | GO:0006355|GO:0042393 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00981 | Lsi-Chr4:10489977 | Lsi05g00769 | Lsi-Chr5:10818138 | 2.03E-37 | dispersed | |
| Lsi08g00841 | Lsi-Chr8:16866771 | Lsi04g00981 | Lsi-Chr4:10489977 | 1.38E-39 | transposed | |
| Lsi03g02216 | Lsi-Chr3:33171653 | Lsi04g00981 | Lsi-Chr4:10489977 | 9.04E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00981 | - | - | csv:101211934 | 246.899 |