Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00982 ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTGGGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAG 381 45.41 MRKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10500418 10503521 + Lsi04G009820.1 Lsi04g00982 661031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00982 126 ProSitePatterns Zinc finger PHD-type signature. 73 119 IPR019786 -
Lsi04g00982 126 MobiDBLite consensus disorder prediction 34 55 - -
Lsi04g00982 126 MobiDBLite consensus disorder prediction 23 68 - -
Lsi04g00982 126 Pfam PHD-finger 73 121 IPR019787 -
Lsi04g00982 126 PANTHER CPG BINDING PROTEIN 2 125 IPR045104 GO:0006355|GO:0042393
Lsi04g00982 126 CDD PHD_AL_plant 72 122 IPR044104 -
Lsi04g00982 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 121 IPR013083 -
Lsi04g00982 126 SUPERFAMILY FYVE/PHD zinc finger 61 124 IPR011011 -
Lsi04g00982 126 ProSiteProfiles Zinc finger PHD-type profile. 70 122 IPR019787 -
Lsi04g00982 126 SMART PHD_3 72 120 IPR001965 -
Lsi04g00982 126 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 2 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00982 - - - csv:101211934 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00982 Lsi-Chr4:10500418 Lsi08g00842 Lsi-Chr8:16868547 8.00E-43 dispersed
Lsi04g00982 Lsi-Chr4:10500418 Lsi03g02216 Lsi-Chr3:33171653 3.72E-61 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00769 . 1 242 Alfin-like Transcription Factor Family AT1G14510 80.2 7.9e-104 373.6
Lsi03g02216 . 14 243 Alfin-like Transcription Factor Family AT1G14510 58.2 5.7e-78 287.7
Lsi02g02913 . 107 311 Alfin-like Transcription Factor Family AT1G14510 66.5 5.3e-76 281.2
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT1G14510 68.6 8.3e-45 177.6
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G26210 71.4 2.6e-86 315.5
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G26210 66.4 1.2e-80 296.6
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT5G26210 58.1 4.0e-79 291.6
Lsi04g00981 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.4e-45 177.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G26210 64.4 1.6e-43 173.3
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G26210 58.3 6.9e-39 157.9
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT3G42790 68.0 1.4e-81 299.7
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT3G42790 58.3 6.7e-79 290.8
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT3G42790 63.8 2.1e-77 285.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT3G42790 67.2 2.6e-43 172.6
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT3G42790 61.2 1.5e-38 156.8
Lsi03g02216 . 7 246 Alfin-like Transcription Factor Family AT5G05610 73.4 9.8e-104 373.2
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G05610 65.9 2.3e-76 282.3
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G05610 59.7 8.7e-76 280.4
Lsi04g00981 . 1 123 Alfin-like Transcription Factor Family AT5G05610 77.2 2.7e-53 205.7
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT5G05610 76.0 4.6e-53 204.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G05610 60.2 1.7e-39 159.8
Lsi11g00171 . 253 397 Alfin-like Transcription Factor Family AT5G05610 51.7 5.5e-38 154.8
Lsi03g02216 . 49 246 Alfin-like Transcription Factor Family AT3G11200 75.2 4.4e-85 311.2
Lsi02g02913 . 104 313 Alfin-like Transcription Factor Family AT3G11200 65.3 2.1e-74 275.8
Lsi05g00769 . 33 244 Alfin-like Transcription Factor Family AT3G11200 63.4 4.5e-69 258.1
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT3G11200 73.2 1.2e-50 196.8
Lsi04g00981 . 43 135 Alfin-like Transcription Factor Family AT3G11200 80.6 6.3e-39 157.9
Lsi05g00769 . 1 150 Alfin-like Transcription Factor Family AT2G02470 80.1 2.4e-68 255.8
Lsi03g02216 . 14 173 Alfin-like Transcription Factor Family AT2G02470 63.6 3.8e-53 205.3
Lsi02g02913 . 107 223 Alfin-like Transcription Factor Family AT2G02470 78.6 8.1e-48 187.6
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT2G02470 69.5 1.9e-44 176.4
Lsi05g00769 . 3 157 Alfin-like Transcription Factor Family AT5G20510 67.9 3.8e-58 221.5
Lsi02g02913 . 107 225 Alfin-like Transcription Factor Family AT5G20510 79.3 5.8e-51 197.6
Lsi03g02216 . 13 163 Alfin-like Transcription Factor Family AT5G20510 61.8 1.0e-50 196.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT5G20510 66.4 1.5e-43 172.9
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G20510 57.9 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25169 PF00628 PHD 1.90E-11 CL0390 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00982 Lsi_Chr04 FPKM 7.985262 7.767806 21.094788 22.456253 11.529007 13.424264 11.904129 19.92425 18.433573 22.341858