Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00982 | ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTGGGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAG | 381 | 45.41 | MRKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP | 126 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 10500418 | 10503521 | + | Lsi04G009820.1 | Lsi04g00982 | 661031 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00982 | 126 | ProSitePatterns | Zinc finger PHD-type signature. | 73 | 119 | IPR019786 | - | |
| Lsi04g00982 | 126 | MobiDBLite | consensus disorder prediction | 34 | 55 | - | - | |
| Lsi04g00982 | 126 | MobiDBLite | consensus disorder prediction | 23 | 68 | - | - | |
| Lsi04g00982 | 126 | Pfam | PHD-finger | 73 | 121 | IPR019787 | - | |
| Lsi04g00982 | 126 | PANTHER | CPG BINDING PROTEIN | 2 | 125 | IPR045104 | GO:0006355|GO:0042393 | |
| Lsi04g00982 | 126 | CDD | PHD_AL_plant | 72 | 122 | IPR044104 | - | |
| Lsi04g00982 | 126 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 121 | IPR013083 | - | |
| Lsi04g00982 | 126 | SUPERFAMILY | FYVE/PHD zinc finger | 61 | 124 | IPR011011 | - | |
| Lsi04g00982 | 126 | ProSiteProfiles | Zinc finger PHD-type profile. | 70 | 122 | IPR019787 | - | |
| Lsi04g00982 | 126 | SMART | PHD_3 | 72 | 120 | IPR001965 | - | |
| Lsi04g00982 | 126 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 2 | 125 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00982 | Lsi-Chr4:10500418 | Lsi08g00842 | Lsi-Chr8:16868547 | 8.00E-43 | dispersed | |
| Lsi04g00982 | Lsi-Chr4:10500418 | Lsi03g02216 | Lsi-Chr3:33171653 | 3.72E-61 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25169 | PF00628 | PHD | 1.90E-11 | CL0390 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00982 | - | - | csv:101211934 | 260.381 |