Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00984 ATGTCGGAACTGGATATGTGCAGTGGCTCTAAGAATAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTATTCTCCGCGAATTCAATCTTGCTTGAACTATCGGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAGAAGGATTTGGATGTCGACGAGCCAAGTTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCACTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACAGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCGACGGATCTGCTGACGTCGATTGTGTCGACGCCTACGGGAGAAAACCTGTTGATTTGATTGTTTCAGCTTGCAGGATGGTGTTCAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGAAGAAGACCAGCAGAAGATCACAACTTCCCCATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGCGGGATATACGGTACTGATGATTTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCACACGATTGGACCGAGTGTCCTTTCGTTCATCCTGGCGAGAACGCCAGGCGTAGAGACCCCAGGAAGTACCCATATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCCCATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGACGAGACTGGCTGTACAAGGAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTATATGCATCAACAGGCTCAGGCATGCCATCACCTAGGTCTCTTTCGAGCAGTGCTGCAGATATGTCTACCATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGATGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTAAAAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCCCTGGTAGTCGGTTAAAGGCCACCTTGAGTGCAAGAGATTTGGATTTAGAGATGGAATTGCTCGGGTTAGAAAAGAACGCGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCGAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAAACGCGAATCTCAGCTCAAGTTCAATCTCCGACTGGGCTGCAGATGCGTCAAAACATGAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCATCCTCACCTGTAAAGAAACCCACCTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAGAGTTTCATTGACCGAGCTGCAGTGAACCGTCTTCCCGGGTTCACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCAGATTGGAACTCGCCCGATGGCAAACTAGACTGGGGACTGCACAGCAATGATCTCAACAAACTCAAGAAATCTGCTTCGTTCGGGATCCGAAACAACGGGATAGGAACTCCCACATTCGCTCCACCAGTAGAGGAACCTGATGTCTCTTGGGTTAACTCCTTGGTCAAAGACGTGCCCTCCGAAAGCTTTGGTCTGTTCGGTGCCGAGAAGCGTCCATACAACCTCAAAAGAGAAATCAATGAGATGCTCCCTTCCTGGATGGAGCAGCAGCTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2076 48.94 MSELDMCSGSKNKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLLLDGSADVDCVDAYGRKPVDLIVSACRMVFNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKITTSPSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLALGSSSLSMPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNASQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTRISAQVQSPTGLQMRQNMNQLRASYPANLSSSPVKKPTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVNRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGLHSNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYNLKREINEMLPSWMEQQLYAEQEQIVA 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10669560 10672156 + Lsi04G009840.1 Lsi04g00984 661033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00984 691 SMART ANK_2a 82 112 IPR002110 GO:0005515
Lsi04g00984 691 SMART ANK_2a 117 149 IPR002110 GO:0005515
Lsi04g00984 691 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Lsi04g00984 691 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Lsi04g00984 691 ProSiteProfiles Ankyrin repeat region circular profile. 82 106 - -
Lsi04g00984 691 MobiDBLite consensus disorder prediction 339 390 - -
Lsi04g00984 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Lsi04g00984 691 MobiDBLite consensus disorder prediction 345 390 - -
Lsi04g00984 691 SUPERFAMILY Ankyrin repeat 73 163 IPR036770 -
Lsi04g00984 691 Gene3D - 35 178 IPR036770 -
Lsi04g00984 691 PANTHER UNKEMPT FAMILY MEMBER 25 689 IPR045234 -
Lsi04g00984 691 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 25 689 - -
Lsi04g00984 691 ProSiteProfiles Ankyrin repeat profile. 82 106 IPR002110 GO:0005515
Lsi04g00984 691 Gene3D - 276 338 - -
Lsi04g00984 691 ProSiteProfiles Zinc finger C3H1-type profile. 275 302 IPR000571 GO:0046872
Lsi04g00984 691 Pfam Ankyrin repeats (3 copies) 80 149 IPR002110 GO:0005515
Lsi04g00984 691 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01696 Lsi-Chr3:28284647 Lsi04g00984 Lsi-Chr4:10669560 2.58E-168 dispersed
Lsi04g00984 Lsi-Chr4:10669560 Lsi10g01438 Lsi-Chr10:18464037 0 dispersed
Lsi04g00984 Lsi-Chr4:10669560 Lsi06g00248 Lsi-Chr6:2788692 2.95E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25170 PF12796 Ank_2 2.40E-09 CL0465 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00984 - - csv:101203102 1230.31