Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00990 ATGGAGAATACTCAACGGATTGTGCAGCTGAGGAGATTAGTGGAGAAAAATGGGGTTTCTACAGAAAAGTATGGTGATCCGACGATGATGAGGTTTTTGATCGCTAGGTCGATGGATGTTGAGAAAGCGGCTAAGATGTTTGTGCAATGGCAGAAATGGAGGGATACGATGGTTCCGAATGGGCGAATCGATGAATCTGAGATTGAAGATGAACTAGGAGCAAGGAAGATTTATTTGCAGGGTTTATCAAAGAATGGGCACTCTGTGATGATCGTTAAAGGGAACAAACATTTTCCTGCCAAGGATCAAGTTCAGTTCAAGAAGTATGTGGCTTATTCCTTGGACAAGACAATTTCAAGGTGCCACTCAATCTGTATTAACTTCATTGCTTTCAAAGGAAGAGAAATTGGGAATGAGAAGCTGATTGGCATTCTTGATCTGCAGCAAATTTCCTTTAAATTTGCTTATTATCCTGAACGTCTGGCCAAGTGCTACATCTTAAACATGCCACGGTTTTTTGTCAGCGTGTGGAGGATGGTCTCTCGGTTCCTTGAGAAGGCAACACTCGAAAAGATTGTGATTGTGAGCAATGAAGAAGAAAGGAGAAGTATGTTAGAGGAAATTGGAGAAGATGTATTGCCAGTTGAGTATGGTGGAAAGGCAAAGCTTATTGCTCTTCAAGATGCTGTCCTTCCTCACTTGGATGTGGGTTTACCGGCCGCCTCAGCTCCATTGAAGCTTTTTCTTCTCTCAACAATGGCGGCTCTATCTTCTTCACGAACCTCCTTCTTCTCCACTGCTTCTCCTCACCCTAAGCCAAGGCGCATCTCTAAAGTTGTTCGTATGGCGTATCAGGAGAACGGCCCCTCTCTCGCTGTCGTCGGCGTCACCGGCGCCGTCGGCCAGGAATTTCTCTCCGTCCTTTCCGATCGCGACTTTCCTTATCGCTCCATCAAGATGCTGGCCTCCAAGCGCTCTGCTGGAAAGTACGTTCGTTTCCATGGCGAAGAGCATATTGTCGAGGAGCTCACTGTGGATAGCTTCGACGGTGTAGACATTGCTCTCTTCAGCGCTGGAGGATCCATCAGCAAACACTTTGGACCGCTTGCTGTTGAGAAGGGAACTATTGTGGTTGATAATAGCTCCGCATTTCGAATGGATGAGAATGTGCCTCTTGTTATTCCGGAGGTCAATCCTGAAGCTATGAAGGGGATGAAGGTTGGAACCGGCAAGGGCGCTTTGATTGCCAATCCTAATTGCTCAACCATCATCTGCTTGATGGCTGTCACTCCTCTGCATCGTCACGCTAAGGTGTCACGCATGGTTGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCAATGGAAGAGCTTCTGCAACAAACTCGTGAGGTCCTGGAAGGAAAACCGCCAACATGTAATATATTTAGGGATCAGTATGCTTTCAATTTGTTCTCCCACAATGCATCTGTTCTTTCAAATGGATACAATGAAGAGGAAATGAAATTAGTAAAAGAAACCCGGAAAATTTGGAGTGATGCAAATGTTAAAGTTACTGCCACTTGTATACGAGTTCCGGTCATGCGTGCACATGCTGAGAGTGTAAATCTTCAATTTGAGAATCCCCTTGATGAGAATGCAGCCAGAGAGATTCTCAAAAATGCTCCTGGAGTCGTCATTATTGACGACCGGGCTGCTAACCAGTTTCCAACGCCATTGAAAGTATCAAACAAAGACGACATTGCTGTTGGAAGGATTCGACAGGATGTTTCACTTGATGGAAATAAAGGGTTGGATATCTTCATCTGTGGTGATCAAATTCGCAAGGGTGCGGCGCTTAATGCTGTTCAGATCGCTGAGTTGTTACTGACGGTCGATTACAGTTATGAGTTTGCATTTAGATCAATGGAAAGAAGCGGATACCTAACAGGATCATTTGATTTAGGGATGATTGAAGTA 1965 45.09 MENTQRIVQLRRLVEKNGVSTEKYGDPTMMRFLIARSMDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELGARKIYLQGLSKNGHSVMIVKGNKHFPAKDQVQFKKYVAYSLDKTISRCHSICINFIAFKGREIGNEKLIGILDLQQISFKFAYYPERLAKCYILNMPRFFVSVWRMVSRFLEKATLEKIVIVSNEEERRSMLEEIGEDVLPVEYGGKAKLIALQDAVLPHLDVGLPAASAPLKLFLLSTMAALSSSRTSFFSTASPHPKPRRISKVVRMAYQENGPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKYVRFHGEEHIVEELTVDSFDGVDIALFSAGGSISKHFGPLAVEKGTIVVDNSSAFRMDENVPLVIPEVNPEAMKGMKVGTGKGALIANPNCSTIICLMAVTPLHRHAKVSRMVVSTYQAASGAGAAAMEELLQQTREVLEGKPPTCNIFRDQYAFNLFSHNASVLSNGYNEEEMKLVKETRKIWSDANVKVTATCIRVPVMRAHAESVNLQFENPLDENAAREILKNAPGVVIIDDRAANQFPTPLKVSNKDDIAVGRIRQDVSLDGNKGLDIFICGDQIRKGAALNAVQIAELLLTVDYSYEFAFRSMERSGYLTGSFDLGMIEV 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10760723 10785936 + Lsi04G009900.1 Lsi04g00990 661039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00990 655 SUPERFAMILY CRAL/TRIO domain 66 223 IPR036865 -
Lsi04g00990 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 291 447 IPR036291 -
Lsi04g00990 655 Pfam Semialdehyde dehydrogenase, NAD binding domain 291 403 IPR000534 GO:0016620|GO:0051287
Lsi04g00990 655 Pfam Semialdehyde dehydrogenase, dimerisation domain 430 611 IPR012280 GO:0008652|GO:0016620|GO:0046983
Lsi04g00990 655 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 65 225 IPR001251 -
Lsi04g00990 655 SMART Semialdhyde_dh_3 290 405 IPR000534 GO:0016620|GO:0051287
Lsi04g00990 655 Gene3D Dihydrodipicolinate Reductase; domain 2 420 607 - -
Lsi04g00990 655 Hamap Aspartate-semialdehyde dehydrogenase [asd]. 288 625 IPR012080 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
Lsi04g00990 655 Pfam CRAL/TRIO domain 76 219 IPR001251 -
Lsi04g00990 655 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 419 612 - -
Lsi04g00990 655 CDD SEC14 78 220 IPR001251 -
Lsi04g00990 655 Gene3D - 291 624 - -
Lsi04g00990 655 PANTHER BNAA09G26740D PROTEIN 282 625 - -
Lsi04g00990 655 SMART CRAL_TRIO_N_2 25 50 IPR011074 -
Lsi04g00990 655 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 282 625 - -
Lsi04g00990 655 Gene3D - 1 230 IPR036865 -
Lsi04g00990 655 SUPERFAMILY CRAL/TRIO N-terminal domain 4 61 IPR036273 -
Lsi04g00990 655 SMART sec14_4 71 222 IPR001251 -
Lsi04g00990 655 TIGRFAM asd_B: aspartate-semialdehyde dehydrogenase 291 625 IPR005986 GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00990 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] - csv:101206329 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00990 Lsi-Chr4:10760723 Lsi04g01095 Lsi-Chr4:13248211 1.05E-39 dispersed
Lsi04g00990 Lsi-Chr4:10760723 Lsi04g01657 Lsi-Chr4:24041024 1.60E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g506 . . . . . Bpe10g01005 . Bma15g00024 Cmo04g01106 . Cma04g01035 . Car04g00966 Car04g00081 Sed04g2992 . . Bhi07g00410 Tan04g1488 Cmetu10g1235 Lac13g1310 Hepe01g0605 . . Cla07g00525 Cam07g0564 Cec07g0614 Cco07g0589 Clacu07g0565 Cmu07g0602 Cre07g0934 . . Cone6ag0356 Cone9ag0387 Lsi04g00990 . . . Blo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00990 Lsi_Chr04 FPKM 7.828036 10.703346 32.426132 33.468048 40.550259 35.550877 43.585079 16.109179 16.119833 16.158772