Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00995 ATGGCGGACGACGCTCCACCAATCCGCCTCGACCCTCACAAGCAATCTCTTCTCAACCGCCACACCGAGAACCACTTCACCGCCGGTGAGATCGTTCGCGATATCATAATCGGCGTCTCCGACGGCCTCACCGTTCCTTTCGCCCTCGCCGCTGGACTTTCCGGCGCCAACGCCTCTTCTTCCATCGTTCTCACCGCCGGAATCGCTGAAGTGGCTGCCGGCGCTATCTCGATGGGACTCGGCGGATATCTTGCGGCGAAGAGCGAAGCGGATCATTATATGAGAGAACTGCGGAGAGAGCAAGAAGAAATCGTCACAGTTCCCGATACTGAAGCGGCAGAAATAGCAGAGATATTGGCGGAGTATGGGATCGAACCACATGAGTATGGTCCAGTTGTGAATGCTCTTAGGAAGAGGCCTCAAGCTTGGTTGGATTTCATGATGAAGTTTGAATTAGGATTGGAAAAGCCAGATCCTAGAAGAGCTCTGCAAAGTGCTTTCACAATTGCATTGGCTTACATATTGGGAGGACTGGTGCCCCTCATTCCTTACATGTTTATTTCAAATGTGACGAGAGCTGTGACAGCCTCGGTTGCATTGACATTAGTAGCGTTGCTCGTGTTCGGGTATGCAAAGGGTTACTTCACAGGCAATAAGCCCTTTAAAAGTGCCATCCAAACCACCCTCATCGGAGCTGTTGCGTCTGCAGCTGCTTTTGGCATGGCCAAGGCTATACAACAATGA 744 51.61 MADDAPPIRLDPHKQSLLNRHTENHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANASSSIVLTAGIAEVAAGAISMGLGGYLAAKSEADHYMRELRREQEEIVTVPDTEAAEIAEILAEYGIEPHEYGPVVNALRKRPQAWLDFMMKFELGLEKPDPRRALQSAFTIALAYILGGLVPLIPYMFISNVTRAVTASVALTLVALLVFGYAKGYFTGNKPFKSAIQTTLIGAVASAAAFGMAKAIQQ 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10880452 10890703 - Lsi04G009950.1 Lsi04g00995 661044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00995 247 Pfam VIT family 32 242 IPR008217 GO:0005384|GO:0030026
Lsi04g00995 247 Coils Coil 83 103 - -
Lsi04g00995 247 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 14 246 IPR008217 GO:0005384|GO:0030026
Lsi04g00995 247 PANTHER VACUOLAR IRON TRANSPORTER 1.1-LIKE 14 246 - -
Lsi04g00995 247 CDD CCC1 11 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00995 K22736 VIT; vacuolar iron transporter family protein - csv:101214881 427.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00995 Lsi09g00700 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00995 Lsi-Chr4:10880452 Lsi09g00700 Lsi-Chr9:7925012 2.20E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g521 Blo01g00775 Blo16g00760 Bda01g01789 Bda11g00191 . . . . Cmo04g01114 . Cma04g01044 . Car04g00974 . . . . Bhi07g00419 . . Lac13g1295 Hepe01g0615 . . Cla07g00519 Cam07g0554 Cec07g0607 Cco07g0579 Clacu07g0558 Cmu07g0595 Cre07g0927 . . Cone6ag0349 Cone9ag0382 Lsi04g00995 Csa05g01974 . . . . . Bda11g00191 . Bpe02g01967 Bma01g00492 Bma06g01135 . . Cmo15g00932 . Cma15g00893 . . Cpe13g00423 . Bhi12g00957 . . . Hepe02g2608 . Lcy10g1376 . . . . . . . Lsi09g00700 . Chy09g00810 Cme09g01325
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000924 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 4 3 4 4 3 3 2 3 3 3 2 2 2 3 2 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00995 Lsi_Chr04 FPKM 4.081957 4.989357 8.419429 8.259113 10.385411 10.576345 11.203526 8.97582 8.535419 10.163917