Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01001 ATGGATCTGGAGGATGCAGACGTGGGTCTAGGCGACGCAAAGGAGTGCACATGGTCTGGAAAGGTCGTCGGCGCAATCTGTTGTAGGATCGAAGGAGTGCGCCAGATCTTCACTGAGCAGGTTGCCCGCGCGGGATTTATAAATGGTGGTTTCATGTCGGTTTTTTCGGCGGCGGTGGCAGTGGCGGTGGTGGCGATATTGATCCATTTGTACTTTTACGGGGCGTGGAGGAGGACGGCGGAGGTGAGGAGAAAGTTGGGAGCACAAGGCGTGACAGGTCCGCCGCCGTCGGTTCTGTACGGTAACTTGCCGGAGATGCAGAAGATCCAGTTGCAGACGGCAGCTATGGCTTCTCCGCCGCACCGTGCATCGGCGATTATCGCTCATGATTATACATCCACTCTCTTTCCCTATTTCGTTGAGTGGAGGAAGCAATACGGGCCATTATACACGTACTCGACAGGGACGAGGCAGCATCTGTACGCCAACAAGGTGGAACTTGTGAAGGACTTGAGCCTCTCAAACAATCTCAACTTGGGGAAGCCCTTCTATGTCACCAAAAAGCTTGCTCCCATTCTTGGCCACAGCGTCGTCCGCTCTAACGGTGCCGTTTGGGCGGTGCAACGTAAGATCATCGCCCCCGAATTCTTCATGGACCGTGTCCGGGCCATGACGATGCTCATGGCAGATGCAGCGTCGTGTCTGATCAACAAATGGGAGAGCAAGATTGGAGACGGAGTGACCGTCGAGATTGAGGTCGATGAGGATCTACGAGGGTTCTCGGCGGATGTCATTTCTAGAGCTTGCTTTGGGAGCTGGTATGAGAAGGGGAAGGAGATTTTTTCCAAGCTTAGGGATCTTCAGAAGTTGGTTAGCGAGGGGAGCTTTCTGTTTGGTTACATGTCTTTCAGAAGAATAAAAAAGCTGGAGAAGGAGATCGAGTCTTTAATATGGGAGACGGTTCAACAGCGCCAAAAAGAGTGCTCTAAAACCTCGTCGGAGAAGGATCTATTGCAGCTGATAATGGAGGCCACCACTAATGACCCAAATATAGGAGGCAATGACTCTTCCAAAAAGTTCATTGTTGACAACTGTAAGAGCATCTACTTCGCAGGCCATGAGTCCACCGCGGTCGCCGCCACTTGGTCCTTGATGCTCCTTGCCCTCCATCCCGAATGGCAAGACCGTATCCGCTCTGAGTTTACTCACGCTTGCCCTGATGGTCACCCCGACATGACCGCGATTTCTCAACTCAAATCGGTGAGTATGGTGGTTCAAGAAACGTTGCGATTGTACCCACCAGCGGCATTTGTGGCGAGGGAGACATTTGCTGAGACACAACTCGGGAATGTGGTGGTTCCAAAGGGTGTTTGCTTATGGACTTTGATTCCGACACTACATAGAGAAGTTGAAATCTGGGGAGAAGATGCGAATGAGTTCAAGCCAGAGCGGTTCGAAAATGGCATAGCCAAGGCATGCAAGTTCCCTCAAGCTTACGTGCCATTCGGGGCAGATTCTCGTTGTCTCCTGAGTATCGCCATTGTCCTTCTTATAGAATGA 1560 51.67 MDLEDADVGLGDAKECTWSGKVVGAICCRIEGVRQIFTEQVARAGFINGGFMSVFSAAVAVAVVAILIHLYFYGAWRRTAEVRRKLGAQGVTGPPPSVLYGNLPEMQKIQLQTAAMASPPHRASAIIAHDYTSTLFPYFVEWRKQYGPLYTYSTGTRQHLYANKVELVKDLSLSNNLNLGKPFYVTKKLAPILGHSVVRSNGAVWAVQRKIIAPEFFMDRVRAMTMLMADAASCLINKWESKIGDGVTVEIEVDEDLRGFSADVISRACFGSWYEKGKEIFSKLRDLQKLVSEGSFLFGYMSFRRIKKLEKEIESLIWETVQQRQKECSKTSSEKDLLQLIMEATTNDPNIGGNDSSKKFIVDNCKSIYFAGHESTAVAATWSLMLLALHPEWQDRIRSEFTHACPDGHPDMTAISQLKSVSMVVQETLRLYPPAAFVARETFAETQLGNVVVPKGVCLWTLIPTLHREVEIWGEDANEFKPERFENGIAKACKFPQAYVPFGADSRCLLSIAIVLLIE 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11167636 11174281 + Lsi04G010010.1 Lsi04g01001 661050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01001 519 PRINTS P450 superfamily signature 371 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS P450 superfamily signature 423 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS P450 superfamily signature 500 509 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 Pfam Cytochrome P450 134 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 Gene3D Cytochrome P450 75 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS E-class P450 group I signature 260 278 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS E-class P450 group I signature 360 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS E-class P450 group I signature 499 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS E-class P450 group I signature 143 162 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PRINTS E-class P450 group I signature 380 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 SUPERFAMILY Cytochrome P450 130 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01001 519 PANTHER CYTOCHROME P450 714A1-RELATED 54 510 - -
Lsi04g01001 519 Coils Coil 306 326 - -
Lsi04g01001 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 54 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01001 Lsi-Chr4:11167636 Lsi09g00466 Lsi-Chr9:4882351 1.51E-74 dispersed
Lsi09g01130 Lsi-Chr9:18150473 Lsi04g01001 Lsi-Chr4:11167636 2.64E-36 dispersed
Lsi09g01110 Lsi-Chr9:17795573 Lsi04g01001 Lsi-Chr4:11167636 1.08E-130 transposed
Lsi03g00243 Lsi-Chr3:3057964 Lsi04g01001 Lsi-Chr4:11167636 5.27E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01001 K20661 - csv:101216582 806.979