Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01015 | ATGGAGGCTTCTTCTTCTTCTTCTATGAAATGGAGCTCTGAAAATGGATGTCAACCACATGTTCTTGCTGTTGATGATAATCTTGTCGATCGTAAACTTGTTGAGAAATTGCTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTCTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCCACACAGCAACTTAGAATGCTCCAATAGGTCAAAGGTCAACATGATTATCACTGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGAAGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCGGAAAACGTGCCCACTCGCATTAACAAGTGTTTGAAGGAAGGAGCAGAGATGTTCATGCTAAAACCTTTGAAACAATCTGATGTAGTGAAACTCAAGTGCCAGTTGATGAACTGA | 459 | 39.65 | MEASSSSSMKWSSENGCQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGLSALEFLGLLDEHNPHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11453891 | 11456407 | - | Lsi04G010150.1 | Lsi04g01015 | 661064 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01015 | 152 | SMART | REC_2 | 19 | 147 | IPR001789 | GO:0000160 | |
Lsi04g01015 | 152 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 8 | 151 | IPR045279 | GO:0009736 | |
Lsi04g01015 | 152 | Pfam | Response regulator receiver domain | 21 | 145 | IPR001789 | GO:0000160 | |
Lsi04g01015 | 152 | SUPERFAMILY | CheY-like | 19 | 146 | IPR011006 | - | |
Lsi04g01015 | 152 | ProSiteProfiles | Response regulatory domain profile. | 20 | 151 | IPR001789 | GO:0000160 | |
Lsi04g01015 | 152 | Gene3D | - | 15 | 152 | - | - | |
Lsi04g01015 | 152 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE | 8 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01015 | Lsi-Chr4:11453891 | Lsi09g00795 | Lsi-Chr9:9086452 | 5.32E-55 | dispersed | |
Lsi04g01015 | Lsi-Chr4:11453891 | Lsi03g01597 | Lsi-Chr3:26990232 | 6.83E-53 | transposed | |
Lsi04g01015 | Lsi-Chr4:11453891 | Lsi06g01513 | Lsi-Chr6:25558287 | 2.17E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25174 | PF00072 | Response_reg | 1.20E-21 | CL0304 | Lsi | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01015 | K14492 | - | csv:101208898 | 251.136 |