Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01015 ATGGAGGCTTCTTCTTCTTCTTCTATGAAATGGAGCTCTGAAAATGGATGTCAACCACATGTTCTTGCTGTTGATGATAATCTTGTCGATCGTAAACTTGTTGAGAAATTGCTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTCTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCCACACAGCAACTTAGAATGCTCCAATAGGTCAAAGGTCAACATGATTATCACTGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGAAGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCGGAAAACGTGCCCACTCGCATTAACAAGTGTTTGAAGGAAGGAGCAGAGATGTTCATGCTAAAACCTTTGAAACAATCTGATGTAGTGAAACTCAAGTGCCAGTTGATGAACTGA 459 39.65 MEASSSSSMKWSSENGCQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGLSALEFLGLLDEHNPHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11453891 11456407 - Lsi04G010150.1 Lsi04g01015 661064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01015 152 SMART REC_2 19 147 IPR001789 GO:0000160
Lsi04g01015 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 151 IPR045279 GO:0009736
Lsi04g01015 152 Pfam Response regulator receiver domain 21 145 IPR001789 GO:0000160
Lsi04g01015 152 SUPERFAMILY CheY-like 19 146 IPR011006 -
Lsi04g01015 152 ProSiteProfiles Response regulatory domain profile. 20 151 IPR001789 GO:0000160
Lsi04g01015 152 Gene3D - 15 152 - -
Lsi04g01015 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 8 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01015 Lsi-Chr4:11453891 Lsi09g00795 Lsi-Chr9:9086452 5.32E-55 dispersed
Lsi04g01015 Lsi-Chr4:11453891 Lsi03g01597 Lsi-Chr3:26990232 6.83E-53 transposed
Lsi04g01015 Lsi-Chr4:11453891 Lsi06g01513 Lsi-Chr6:25558287 2.17E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25174 PF00072 Response_reg 1.20E-21 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01015 K14492 - csv:101208898 251.136