Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01017 ATGCTAGCATTGTTGAAGATGAAACGGCTGATTGAGCTCTTCTTCTTGTTCGTTTTGGCTCCACTTTGTGCTCGATGTGTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTCAAGATCCGAAACTGAAGCTCGCGAGCTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGCAGTCCCAGATCCAACCGGGTCATCGAGCTCAACCTCAATGGCTTCTCTCTCTCGGGTCGGCTTGGCCGCGGGCTTTTTCAGTTGGAGTTTCTGCAGAGCTTGTCGCTCTCGAAGAACAATCTTAGTGGGAATATAAGCCCTAATTTCGCTCGAGTCGACAATCTTCAGATGATTGATTTGAGTGGGAATAATTTCTCCGGTACTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATTTCTCTGGCCAACAACAAATTTTCTGGGAAAATTCCTGATAGTTTGAGCTTCTGTGGGAGTCTTATTGCAGTTAACTTTTCCTCGAATCAGTTTTCGGGTTATTTGCCTTCTGGGATTTGGTCTTTCAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTAGTGGGTGAAATTCCGAAGGTAATTGGGACTTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCGGTTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGACTCTTCCTCAGACCATGCAAAAACTTGTTTTGTGTGGTAATCTGATTTTAAGCAGGAATTTGTTTGAAGGAGATGTTCCAGAGTGGATAGGAGAAATGAAAAACCTTGAAACTCTGGACTTTTCAGGGAACAATTTTACTGGTCGTATTCCAACTACAATGGAGAATCTTCAATATCTAAAAGTATTGAATCTCTCTTCAAATGGCTTTACAGATAGCTTTCCAGAATCTGTGTTGAAGTGCCAAAGCCTTTTGGTATTAGATTTCAGCCATAATTTGATCATGGGTAATCTTCCCGCGATCCGAAGTTTAGGCAAGCTGCAGTTTCTGGACCTGTCTGGGAATTATTTTGTTGGGCCTATTCCAGAAAGTATTGGAGATTTGAAAGCTTTAAGCATTCTTGATTTGAGCAGAAATCGGCTGAATGAAACCATTCCTGATGCAATTGAAGGAGCTGTATCCCTAATTGAGCTGAAGCTGGATGGAAATTTCCTAGGGGGTGAAATTCCTTCTTCAATTGGTCACTGTTCTTCCCTTGCAACTCTGTTCATATCACAGAATAACTTAACTGGCCCGATACCAGCAGCACTTGCTAAACTCTCTTATCTCCAAAATGTTGATTTATCCTTTAACAATCTCAATGGAACCCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATTTCTCACAACGACCTCAAGGGCGAGCTGCCTGGTGGTGGATTCTTTAACACCATCTCCCCTTCATCCGTTTCTGGCAATCCATCCCTTTGTGGCTCTGTTGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATTGTTCTCGATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGTGCCGCTGCTTTCATAATCATTGGTGTTATCTCGATCACCATCCTCAACCTTCACGTTCAATCACCCACGTCTTCTTCGTCTGCAGCTGCACTTGCATTATCTGTTGGGGACGATTTCAGTAATTCCTCCAGTCCCGATGCGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTCAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTCGGGCGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGACGGACACTCGGTTGCCATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTTGGGATTGTCAGGCACCAAAATCTCGTGGCACTTGAAGGTTATTATTGGACTCCCTCACTACAGCTCCTTATATACGAATTTGTCTCCGGAGGTAGCTTGTATAGGTTGCTCCACGAAACATCAGATGACAATGTCCTTTCATGGAACGAGAGATTCGACATAATTCTCGGGACAGCGAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCTAAGGTGGGAGATTATGGTCTAGCTAGATTACTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAAATCCAAAGCGCACTCGGTTACATGGCACCAGAGTTTGCTTGCAGGACGGTAAAGATAACCGAAAAATGCGATGTGTATGGCTTTGGGATATTGATACTAGAGGTAGTTACAGGGAAGAGACCTGTCGAGTACATGGAAGACGACGTTGCAGTCCTCTGCGACATGGTCAGAGAAGCAGTGGAAGAAGGAAGAGCCGAAGAATGCATCGACAGGAAACTGAGGGAGAATTTCCCCATCGAAGAGGCTGTTCCCATATTAAAATTAGGGCTGATATGCACCTCCCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCATCTGAATTACAAGAGGAATTGGGATAA 2778 43.63 MLALLKMKRLIELFFLFVLAPLCARCVNLSLNDDVLGLIVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSNRVIELNLNGFSLSGRLGRGLFQLEFLQSLSLSKNNLSGNISPNFARVDNLQMIDLSGNNFSGTVPDDFFRQCRSLRVISLANNKFSGKIPDSLSFCGSLIAVNFSSNQFSGYLPSGIWSFSGLRSLDLSDNALVGEIPKVIGTLYNLRTLNLSKNRFSGQIPDGIGSCLLLRSIDLSENSFSGTLPQTMQKLVLCGNLILSRNLFEGDVPEWIGEMKNLETLDFSGNNFTGRIPTTMENLQYLKVLNLSSNGFTDSFPESVLKCQSLLVLDFSHNLIMGNLPAIRSLGKLQFLDLSGNYFVGPIPESIGDLKALSILDLSRNRLNETIPDAIEGAVSLIELKLDGNFLGGEIPSSIGHCSSLATLFISQNNLTGPIPAALAKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNDLKGELPGGGFFNTISPSSVSGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSISSSLPPSNNHRRNRNILSISALVAIGAAAFIIIGVISITILNLHVQSPTSSSSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYRLLHETSDDNVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVREAVEEGRAEECIDRKLRENFPIEEAVPILKLGLICTSHVPSNRPDMREMVKILEMIKCPSELQEELG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11513909 11518339 + Lsi04G010170.1 Lsi04g01017 661066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01017 925 CDD STKc_IRAK 648 912 - -
Lsi04g01017 925 SUPERFAMILY L domain-like 195 531 - -
Lsi04g01017 925 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Lsi04g01017 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 359 916 - -
Lsi04g01017 925 Gene3D Phosphorylase Kinase; domain 1 631 718 - -
Lsi04g01017 925 SUPERFAMILY Protein kinase-like (PK-like) 645 918 IPR011009 -
Lsi04g01017 925 Gene3D Ribonuclease Inhibitor 194 270 IPR032675 -
Lsi04g01017 925 Gene3D Transferase(Phosphotransferase) domain 1 719 923 - -
Lsi04g01017 925 SMART LRR_typ_2 386 410 IPR003591 -
Lsi04g01017 925 SMART LRR_typ_2 98 121 IPR003591 -
Lsi04g01017 925 SMART LRR_typ_2 291 315 IPR003591 -
Lsi04g01017 925 SMART LRR_typ_2 122 146 IPR003591 -
Lsi04g01017 925 SMART LRR_typ_2 219 243 IPR003591 -
Lsi04g01017 925 SMART LRR_typ_2 482 506 IPR003591 -
Lsi04g01017 925 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Lsi04g01017 925 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01017 925 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 8 358 - -
Lsi04g01017 925 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Lsi04g01017 925 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lsi04g01017 925 Gene3D Ribonuclease Inhibitor 271 531 IPR032675 -
Lsi04g01017 925 Pfam Protein tyrosine and serine/threonine kinase 644 911 IPR001245 GO:0004672|GO:0006468
Lsi04g01017 925 SUPERFAMILY L domain-like 32 267 - -
Lsi04g01017 925 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Lsi04g01017 925 Pfam Leucine rich repeat 197 255 IPR001611 GO:0005515
Lsi04g01017 925 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Lsi04g01017 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 359 916 - -
Lsi04g01017 925 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 358 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00261 Lsi04g01017 CCT
Lsi03g00261 Lsi04g01017 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02285 Lsi-Chr3:33709382 Lsi04g01017 Lsi-Chr4:11513909 0 dispersed
Lsi04g01017 Lsi-Chr4:11513909 Lsi07g00056 Lsi-Chr7:582004 0 dispersed
Lsi03g00261 Lsi-Chr3:3236746 Lsi04g01017 Lsi-Chr4:11513909 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83574 PF07714 PK_Tyr_Ser-Thr 1.30E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01017 - - csv:101217762 1595.1