Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01023 | ATGGAACTCCCCAATCCCACTAATCAAATGGCTTCCTCTTCCAACCCCACTGCCCCATTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGACGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGAAAATGGGTCTTCGTCGAATCCTGAAGTGGCTGGCGGCGGTACTGCGGTGGAGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCAGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCCGAGTTGTGGACTATTGATCCTAAACGTGCCAAAAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACTGAAGCGACAACTCTCTCTGCACAGCTCACGTTGTACCAGATTTGCATTAAAGTCACAGAAAGAGATACCACAGGGCTTTCAACCGAAAACTCAGAGCTCAAACTACGTTTACAAGCTATGGAACAGCAAGCTCATTTACGCGATGGTATGCATCCACCTATACCCTGTCTATCTCTAAATGAAGCTTTGAAAAAGGAAGTCGAGCGGCTCAAGTTTGCGACTGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGCCTCAAGTTCCATATCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCGACACAACCCACAGAGGACGATGCAAGGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCGAACCCACATCAAGCTTTGTTTGTTGCATCGCACCAGCCTCACACCTTGACAGAAATATTTCAGCAGGATCCTATTAGACAATTGCAGGGTCTCGATATCAGTAGCAGAGGCACAGAAATAAAACCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA | 1080 | 47.78 | MELPNPTNQMASSSNPTAPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFGDLGFEDDLLCTFMDIEKIGSKIENGSSSNPEVAGGGTAVENVEGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQICIKVTERDTTGLSTENSELKLRLQAMEQQAHLRDGMHPPIPCLSLNEALKKEVERLKFATGEVMTATDSYNFGMPQVPYPQSCFSHQPQPGRHNPQRTMQGPQVHPFHSSLPNPHQALFVASHQPHTLTEIFQQDPIRQLQGLDISSRGTEIKPEGSSISVSESSSTF | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11638252 | 11643980 | + | Lsi04G010230.1 | Lsi04g01023 | 661072 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01023 | 359 | Gene3D | - | 141 | 197 | - | - | |
Lsi04g01023 | 359 | Pfam | bZIP transcription factor | 142 | 187 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi04g01023 | 359 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi04g01023 | 359 | Coils | Coil | 158 | 185 | - | - | |
Lsi04g01023 | 359 | SUPERFAMILY | Leucine zipper domain | 142 | 189 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi04g01023 | 359 | MobiDBLite | consensus disorder prediction | 276 | 295 | - | - | |
Lsi04g01023 | 359 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 140 | 186 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi04g01023 | 359 | SMART | brlzneu | 138 | 202 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi04g01023 | 359 | CDD | bZIP_plant_RF2 | 143 | 190 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi04g01023 | 359 | MobiDBLite | consensus disorder prediction | 339 | 359 | - | - | |
Lsi04g01023 | 359 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lsi04g01023 | 359 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 356 | - | - | |
Lsi04g01023 | 359 | PANTHER | BZIP TRANSCRIPTION FACTOR 18 | 7 | 356 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01023 | Lsi-Chr4:11638252 | Lsi10g01485 | Lsi-Chr10:18966125 | 1.47E-104 | dispersed | |
Lsi04g01023 | Lsi-Chr4:11638252 | Lsi11g01421 | Lsi-Chr11:22748437 | 4.74E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25175 | PF00170 | bZIP_1 | 2.90E-08 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01023 | - | - | csv:101209388 | 598.586 |