Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01023 ATGGAACTCCCCAATCCCACTAATCAAATGGCTTCCTCTTCCAACCCCACTGCCCCATTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGACGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGAAAATGGGTCTTCGTCGAATCCTGAAGTGGCTGGCGGCGGTACTGCGGTGGAGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCAGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCCGAGTTGTGGACTATTGATCCTAAACGTGCCAAAAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACTGAAGCGACAACTCTCTCTGCACAGCTCACGTTGTACCAGATTTGCATTAAAGTCACAGAAAGAGATACCACAGGGCTTTCAACCGAAAACTCAGAGCTCAAACTACGTTTACAAGCTATGGAACAGCAAGCTCATTTACGCGATGGTATGCATCCACCTATACCCTGTCTATCTCTAAATGAAGCTTTGAAAAAGGAAGTCGAGCGGCTCAAGTTTGCGACTGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGCCTCAAGTTCCATATCCCCAATCTTGCTTTTCACACCAACCACAACCTGGGCGACACAACCCACAGAGGACGATGCAAGGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCGAACCCACATCAAGCTTTGTTTGTTGCATCGCACCAGCCTCACACCTTGACAGAAATATTTCAGCAGGATCCTATTAGACAATTGCAGGGTCTCGATATCAGTAGCAGAGGCACAGAAATAAAACCAGAAGGCTCCTCCATATCCGTCAGTGAAAGTAGCAGCACATTTTAA 1080 47.78 MELPNPTNQMASSSNPTAPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFGDLGFEDDLLCTFMDIEKIGSKIENGSSSNPEVAGGGTAVENVEGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQICIKVTERDTTGLSTENSELKLRLQAMEQQAHLRDGMHPPIPCLSLNEALKKEVERLKFATGEVMTATDSYNFGMPQVPYPQSCFSHQPQPGRHNPQRTMQGPQVHPFHSSLPNPHQALFVASHQPHTLTEIFQQDPIRQLQGLDISSRGTEIKPEGSSISVSESSSTF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11638252 11643980 + Lsi04G010230.1 Lsi04g01023 661072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01023 359 Gene3D - 141 197 - -
Lsi04g01023 359 Pfam bZIP transcription factor 142 187 IPR004827 GO:0003700|GO:0006355
Lsi04g01023 359 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g01023 359 Coils Coil 158 185 - -
Lsi04g01023 359 SUPERFAMILY Leucine zipper domain 142 189 IPR046347 GO:0003700|GO:0006355
Lsi04g01023 359 MobiDBLite consensus disorder prediction 276 295 - -
Lsi04g01023 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 186 IPR004827 GO:0003700|GO:0006355
Lsi04g01023 359 SMART brlzneu 138 202 IPR004827 GO:0003700|GO:0006355
Lsi04g01023 359 CDD bZIP_plant_RF2 143 190 IPR044759 GO:0003700|GO:0006355
Lsi04g01023 359 MobiDBLite consensus disorder prediction 339 359 - -
Lsi04g01023 359 MobiDBLite consensus disorder prediction 1 22 - -
Lsi04g01023 359 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 356 - -
Lsi04g01023 359 PANTHER BZIP TRANSCRIPTION FACTOR 18 7 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01023 Lsi-Chr4:11638252 Lsi10g01485 Lsi-Chr10:18966125 1.47E-104 dispersed
Lsi04g01023 Lsi-Chr4:11638252 Lsi11g01421 Lsi-Chr11:22748437 4.74E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25175 PF00170 bZIP_1 2.90E-08 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01023 - - csv:101209388 598.586