Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01024 ATGGCTTTTTACTCACCATTTTCCAACCTCCTCCTTCTTCCTTTCTTCTTCATCTCTTTTCGCTTCACTTTGGCCGACTACAGCGGCTGGCAAAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTATAGCCAAGGGTACGGCACGAACACGGTGGCGCTGAGCACGGCGCTATTTAACAATGGGTTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGCCTTCCCGGAACCATTAGGGTCACTGCAACCAACTTCTGCCCTCCAAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCTCTCCAACACTTCGACATGGCTGAGCCTGCCTTCCTTCAGATCGCTCAGTACCGTGCCGGAATCGTCCCTGTCTCCTTTCGCAGGTAA 459 52.51 MAFYSPFSNLLLLPFFFISFRFTLADYSGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRR 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11657775 11659464 + Lsi04G010240.1 Lsi04g01024 661073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01024 152 PRINTS Expansin/Lol pI family signature 143 152 IPR007118 GO:0005576
Lsi04g01024 152 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Lsi04g01024 152 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Lsi04g01024 152 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lsi04g01024 152 Pfam Lytic transglycolase 65 150 IPR009009 -
Lsi04g01024 152 SMART dpbb_1 65 150 IPR007112 -
Lsi04g01024 152 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Lsi04g01024 152 PANTHER EXPANSIN-A15 7 152 IPR002963 GO:0009664
Lsi04g01024 152 SUPERFAMILY Barwin-like endoglucanases 29 152 IPR036908 -
Lsi04g01024 152 PANTHER EXPANSIN 7 152 - -
Lsi04g01024 152 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Lsi04g01024 152 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Lsi04g01024 152 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Lsi04g01024 152 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Lsi04g01024 152 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Lsi04g01024 152 Gene3D - 19 152 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01024 Lsi-Chr4:11657775 Lsi04g00406 Lsi-Chr4:3973635 6.03E-75 dispersed
Lsi08g01302 Lsi-Chr8:21385779 Lsi04g01024 Lsi-Chr4:11657775 9.61E-66 dispersed
Lsi03g00266 Lsi-Chr3:3285863 Lsi04g01024 Lsi-Chr4:11657775 1.22E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01024 - - csv:101209633 295.819