Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01031 ATGGATCTTGAGCATGGGAAGTGTTGGAATAGTTCAAAGAAGGATTCTTGGAAAACGGTTCTTGTATTGGCCTATCAAAGCCTTGGTGTCGTCTATGGCGATTTGAGCATCTCTCCTCTTTACGTCTACAGAAGCACTTTTGCTGAAGATATCCAACATTCAGATACTAATGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTCACTATAGTCCCCCTTTTCAAATACGTCTTTGTGGTTCTCAGAGCTGATGACAATGGCGAAGGTGGGACTTTTGCTCTATACTCGTTAATTTGCAGACATGCCAAAGTAAGCCTTCTACCCAACAGACAAGTTGCAGATGAAGCTCTTTCCACTTACTTGCTAGAACATCCACCAGAGAAGAAGAAGCAATCTAAGGTTAAATTGCTCCTGGAGAAGCACAGAGCTCTTCACACTGCCTTGTTGATTCTTGTTCTTCTAGGGACTTGTATGGTGATTGGAGATGGGCTTCTCACTCCTGCCATTTCTGTTTTCTCAGCAGTTTCTGGACTTGAGTTATCCATGTCCAAGGCTCACCATCAGTACGCAGTGGTTCCAATCACTTGCTTTATCTTGGTTTGTCTATTTGCACTTCAACACTACGGCACACATCGAGTTGGCTTTGTATTTGCTCCCATTGTATTGACATGGCTACTCTGCATCAGCACCCTTGGCATATACAATATTATACACTGGAATCCACACGTTTATCAGGCTCTTTCTCCATATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGCGGTTGGATGTCGTTGGGGGGTATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATTCAGATTGCTTTCACTTTTCTGGTGTATCCAGCGCTTATCTTGGCATACATGGGCCAAGCTGCTTATTTATCACAACATCACCATACCACCAAAAACATTGGCTTCTACGTTTCTGTTCCAGAGAGTGTGAGATGGCCAGTGCTTACAATTGCTATACTTGCGTCGGTTGTCGGAAGCCAAGCAATCATCAGCGGAACATTCTCCATTATTAACCAGAGCCAGTCCCTTGGGTGCTTCCCTAGAGTGAAGGTTGTTCATACCTCTGATAAAATCCATGGCCAGATCTACATCCCAGAGATAAATTGGATTCTTATGATTCTCTGTGTCGCCGTTACCATTGGATTTAGAGACATAAAACACCTCGGAAATGCATCAGGTGAGTCGGTTGCTGCGTACTTATCATATACTACTTTCATCTTGATTTCCAGACGTGTGGAAGTCATTTTTGCTTACTTGGAATACATACGTTCCATTCTCGACAATCTTATTCGCAAACTTTCCATTGCCCATATAATCTTGAAGCAGAGTCTGGCTGTAATGACTGTGATGCTTGTGACAACCTGTCTTACATCTTTGGTGATTGTCCTCTGTTGGAACAAATCTCCACTTTTAGCTCTCTCCTTTTTAATCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTGACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTTCTAGCTCTCTTCCTCATGACCATCATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATTTGATCTTCACAACAAGGTTTCATTAGAATGGTTGCTAGCATTGGGGCCAAGCCTTGGGATCGCTCGTGTCCCTGGCATTGGATTAGTCTTCACTGATCTCACCTCTGGCATCCCTGCCAACTTCTCCCGATTTGTCACCAACCTCCCGGCATTTCATCGGATTCTTGTCTTTGTATGCATAAAATCAGTACCAGTTCCTTTCGTACCTCCAGCTGAGCGATATCTCGTGGGAAGAGTTGGCCCAGCTACGCATCGATCATACAGGTGCATTGTTCGATATGGCTACCGTGATGTTCACCAGGATGTGGACTCATTTGAAACTGAATTAATAAAGAAACTCGCAGACTACATCCGCTATGACTGGTTTAGAAAGCAAAGAGGCAACTCTTGCAGTGAGGACGATGCATCACGTTCAAATGAATCGACAAGTGAGTGCAAGCTGGCTGTGATCGGAACCATAGCATTTGCAGGTGCAACTGCCTATGAAGAGACTGTGCAGCCTGCAAGCGTATCGGTTGGGTTCCAAACTGTCGACAGCATCGCTGATGTGATTGAAATGGAGCCACTGGGAGAAGAAAGAAGAGTTAGGTTTGCCTTAGATGATGAATTCGAAGGTGGCTCACAAGCTGAAACAGAAGCCCTTCTGCAAGAAGAGCTAGAAGATCTTGTAGCAGCGCAGCAATCAGGGACAGCGTTCATTCTTGGGCATTCACACGTCCGGGCGAAGCAAGGATCGTCTCTGTTGAAGAGACTGGCCATTAACTATGGCTACAACTTCCTGAGAAGGAATTGCAGAGGAGCAGATGTTGCTCTTAAGGTGCCACCAGTATCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2523 44.43 MDLEHGKCWNSSKKDSWKTVLVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSDTNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPPEKKKQSKVKLLLEKHRALHTALLILVLLGTCMVIGDGLLTPAISVFSAVSGLELSMSKAHHQYAVVPITCFILVCLFALQHYGTHRVGFVFAPIVLTWLLCISTLGIYNIIHWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHHTTKNIGFYVSVPESVRWPVLTIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWILMILCVAVTIGFRDIKHLGNASGESVAAYLSYTTFILISRRVEVIFAYLEYIRSILDNLIRKLSIAHIILKQSLAVMTVMLVTTCLTSLVIVLCWNKSPLLALSFLIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPATHRSYRCIVRYGYRDVHQDVDSFETELIKKLADYIRYDWFRKQRGNSCSEDDASRSNESTSECKLAVIGTIAFAGATAYEETVQPASVSVGFQTVDSIADVIEMEPLGEERRVRFALDDEFEGGSQAETEALLQEELEDLVAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11824195 11831407 + Lsi04G010310.1 Lsi04g01031 661080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01031 840 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 434 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g01031 840 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 463 840 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g01031 840 Pfam K+ potassium transporter 25 437 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g01031 840 Pfam K+ potassium transporter 472 650 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g01031 840 PANTHER POTASSIUM TRANSPORTER 2 1 434 - -
Lsi04g01031 840 PANTHER POTASSIUM TRANSPORTER 2 463 840 - -
Lsi04g01031 840 TIGRFAM kup: potassium uptake protein 23 435 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g01691 Lsi04g01031 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01554 Lsi-Chr2:21392597 Lsi04g01031 Lsi-Chr4:11824195 0 dispersed
Lsi04g00532 Lsi-Chr4:4919570 Lsi04g01031 Lsi-Chr4:11824195 0 dispersed
Lsi04g01031 Lsi-Chr4:11824195 Lsi05g00431 Lsi-Chr5:5469034 0 dispersed
Lsi04g01031 Lsi-Chr4:11824195 Lsi03g01412 Lsi-Chr3:25070978 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01031 K03549 - csv:101211022 1494.56