Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01033 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTTCTCCACAGCAAATTATGGGGAGAAGACACTCATTGCAGGGTCCTCCTGGAACTCTCAACACCATCACTCCGTGTGCAGCCTGTAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCCCATGAGCCTCATAAATTTGCCTCCGTCCACAAGGTTTTCGGCGCTAGCAATGTCTCGAAGATGCTCATGGAAGTTTCCGAGAATCAAAGAGCGGATGCTGCGAACAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGCATGGGCGCCATTTCAGCCTTACAACACCAAATTCAAGCCTTACAAACTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACATAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAGCAACATGTTCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTTGCCGTGCCACCACCGCCTCCGCCACCTCCGCTACCGCTGCCGCCTCATCATGATGCTTCTTCTTCTTCCTCCTTGTACAACCGACCGGCAGCAGTGGCAGCCGTCGAGGCTGATTATAGTACTATTTCAAGTGATGAAAATATTACCTACTTTGTTAGTACTTCTAGTACTGCTCATCAATTGAATTCTTAG 738 45.39 MSKERERFDEIAKKIKRETDVSSNISPQQIMGRRHSLQGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQTELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSTEVVSVAVPPPPPPPPLPLPPHHDASSSSSLYNRPAAVAAVEADYSTISSDENITYFVSTSSTAHQLNS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12002599 12004948 - Lsi04G010330.1 Lsi04g01033 661082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01033 245 MobiDBLite consensus disorder prediction 181 207 - -
Lsi04g01033 245 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Lsi04g01033 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 35 233 - -
Lsi04g01033 245 Coils Coil 128 148 - -
Lsi04g01033 245 MobiDBLite consensus disorder prediction 182 198 - -
Lsi04g01033 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 233 - -
Lsi04g01033 245 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01033 Lsi-Chr4:12002599 Lsi10g01458 Lsi-Chr10:18689456 2.29E-47 dispersed
Lsi02g01506 Lsi-Chr2:20946486 Lsi04g01033 Lsi-Chr4:12002599 1.54E-28 transposed
Lsi03g00275 Lsi-Chr3:3380756 Lsi04g01033 Lsi-Chr4:12002599 1.20E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25176 PF03195 LOB 3.10E-40 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01033 - - csv:101219425 407.142