Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01038 ATGGGAGCTTCTAGCCTCCCTTGTTTTTCATCGCTATTTGGAGTTTTTCCACTTGAAAACAATGCTCCCAACAAATTTTTACCATTTTCTTCAATTCTTTCAAAACCCCATTTCCGATTGAACAGGATTTGCTGCGGAGTCCCCGAAAGTGGAATTCAGCAAAGCCCCTCAACTTCCAGAGCTTCCTCTTCCAAGAACAGGATGGAAGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCCTATGAGTATCACCATGAACTCGGTATGAACTATAGTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGTAGATATCGATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATCGACTTACAATCAATTATAAATAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCGGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCCTGCTAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTCTACGTGCATTGCACTGCTGGACTTGGAAGGGCCCCGGCTGTTGCGATAGCCTACCTGTACTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCTAAAAGACCTTGTGGACCAAGTAAAAAAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGATCCATGGAAGGAGCCGTTTGAGAGCCTTCCAGATAATGCATTCGAGGATATTGCAGATTGGGAAAGAAACTTGATTCGGGAGCGGACTTCTCTAGGATCTGCTAAGGCTCATCTAGTTCATTTTCCCACTTTATTCCTTCCTGTTGTTGCTCTATCTGCATTATCAGTGTTTCGAAACAGAATTGCCCAAGCTGTTCATTGTACGTATTTACATTATATCGATATTTCAGGAGGGTGTCAATATGTGCAGGCTGTGGAGAATAAGAGTTGGGACAATATATGTAGCAATAGAGTGTTGCACTTGATCTCTGCACAGAAATTTGGTTTCCTAATCTTGAAATTTTCTTCAGGCCAGGCAAAGGAGTTCTCATTTGTCTAA 1119 41.82 MGASSLPCFSSLFGVFPLENNAPNKFLPFSSILSKPHFRLNRICCGVPESGIQQSPSTSRASSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYSVIADNLIVGSQPQKPVDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSIINRCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPSKKAIRGATYDLSKNDPWKEPFESLPDNAFEDIADWERNLIRERTSLGSAKAHLVHFPTLFLPVVALSALSVFRNRIAQAVHCTYLHYIDISGGCQYVQAVENKSWDNICSNRVLHLISAQKFGFLILKFSSGQAKEFSFV 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12179322 12182702 + Lsi04G010380.1 Lsi04g01038 661087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01038 372 Coils Coil 61 81 - -
Lsi04g01038 372 Gene3D Protein tyrosine phosphatase superfamily 75 279 IPR029021 -
Lsi04g01038 372 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Lsi04g01038 372 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 29 276 - -
Lsi04g01038 372 SMART dsp_5 92 234 IPR020422 GO:0006470|GO:0008138
Lsi04g01038 372 Pfam Dual specificity phosphatase, catalytic domain 115 229 IPR000340 GO:0008138|GO:0016311
Lsi04g01038 372 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 29 276 - -
Lsi04g01038 372 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
Lsi04g01038 372 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Lsi04g01038 372 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01385 Lsi-Chr3:24823499 Lsi04g01038 Lsi-Chr4:12179322 2.99E-27 dispersed
Lsi04g00121 Lsi-Chr4:1337164 Lsi04g01038 Lsi-Chr4:12179322 9.26E-35 dispersed
Lsi04g01038 Lsi-Chr4:12179322 Lsi07g01277 Lsi-Chr7:18609281 2.82E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01038 - - bhj:120080941 535.798