Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01054 ATGGATGATACTCAAACCCCATTTGATTTTCTCTCTTTTTGGAGATACCCATTTGGGGATTTTGGGATTTTCTTTACTCACTCTCCTAATGGGCTCTGTTTTTCACATAAGAAGAAGGAAAAATGGAAGGTTCTGAGAAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTTGTTTTTGTTGCTTTATTTGGTTTTTATTCCACCTGTTTTCAGCCAGGATTGGGATGGTGTGGTTGTGACTCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAGCTTGATGATCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAGGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTTAGTTTACACGACAACTTCATTGGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCCGGTTCCATCCCGGCTTCATTGGGGCGTTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCATCTACTTTGGCTAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCGATTCCGACGAGTCTTGCTCGATCGGTGTCCCTTACTTTCCTTGATCTTCAACATAACAATCTCTCAGGCAGCATTCCGGACTCTTGGGGTGGCGATGTTACCGAGGGAAACCGGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGCCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTAGTAGGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAGATTGAGAAACCTCTCTATTCTCAACTTGAGTAGAAACAGATTCAATGGTCAAATTCCTAAAACTTTAGGGAACATTTCAACACTTACACAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGCCTTCAATCCTTAAATGTCTCATACAACAACCTTTCGGGTTCGGTTCCTCCAGTGCTCGCCGAAAAATTCAATGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCCGTGCCCATCCCCGGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTTTGACAACCCGACATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGCTGCCAGGGCCGAGAAGGGTGTCCCTCCGACTAGCAGTGAAGTTGAAGCGGGAGGAGGGGATGCTGGTGGAAAGCTTGTCCATTTCGACGGCCAAACGGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAAGCCACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATCTACTAGCTTTAAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGTCTCGCAGCGTTCCTGCACGCTCGTGGACCGGACACATCCATTGATTGGCCGACGAGGATGAAGATAGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACACGAATGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATAAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTCGGGTACCGAGCACCAGAGCTCTCAAAGCTGAAGAAAGCAAACACAAAAACCGACATTTACAGCCTTGGAGTAATCATACTAGAACTCTTGACTGGTAAATCCCCCGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAATGGACTAATGAAGTTTTCGATTTGGAGCTGATGAGGGATGCATCTACCATTGGAGATGAGTTACTAAACACTCTGAAACTTGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCAGAAGTTCAACAAGTTTTGCAACAACTGGAAGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAACAGGAGGAGGAGGAGCCCCCTCAACTAGTGAGTGA 2550 44.71 MDDTQTPFDFLSFWRYPFGDFGIFFTHSPNGLCFSHKKKEKWKVLRKNPNGFVSGGLGLLFLLLYLVFIPPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGRCPLLQTLHISNNLLTGTIPSTLANSTKLYWLNLSFNSFSGPIPTSLARSVSLTFLDLQHNNLSGSIPDSWGGDVTEGNRVFQLKSLTLDGNLLSGTIPTSLSKLSELQVVSLSHNRLNGGIPEEISRLSLLKTLDVSNNFLNGSLPQSFDRLRNLSILNLSRNRFNGQIPKTLGNISTLTQLDLSQNNLSGEIPASLADLQGLQSLNVSYNNLSGSVPPVLAEKFNASSFVGNIQLCGFSGSIPCPSPAPSEEAPAPPPESLTTRHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGAARAEKGVPPTSSEVEAGGGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHTNENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGTGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12428994 12432391 + Lsi04G010540.1 Lsi04g01054 661103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01054 849 Gene3D Ribonuclease Inhibitor 341 436 IPR032675 -
Lsi04g01054 849 SMART LRR_typ_2 150 174 IPR003591 -
Lsi04g01054 849 SMART LRR_typ_2 301 324 IPR003591 -
Lsi04g01054 849 SMART LRR_typ_2 325 348 IPR003591 -
Lsi04g01054 849 SMART LRR_typ_2 247 270 IPR003591 -
Lsi04g01054 849 SMART LRR_typ_2 397 421 IPR003591 -
Lsi04g01054 849 SMART LRR_typ_2 349 373 IPR003591 -
Lsi04g01054 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 21 350 - -
Lsi04g01054 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 345 831 - -
Lsi04g01054 849 MobiDBLite consensus disorder prediction 826 849 - -
Lsi04g01054 849 SUPERFAMILY Protein kinase-like (PK-like) 559 824 IPR011009 -
Lsi04g01054 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 21 350 - -
Lsi04g01054 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 345 831 - -
Lsi04g01054 849 CDD STKc_IRAK 561 826 - -
Lsi04g01054 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Lsi04g01054 849 Gene3D Ribonuclease Inhibitor 83 241 IPR032675 -
Lsi04g01054 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01054 849 Gene3D Ribonuclease Inhibitor 242 340 IPR032675 -
Lsi04g01054 849 SUPERFAMILY L domain-like 123 420 - -
Lsi04g01054 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Lsi04g01054 849 MobiDBLite consensus disorder prediction 513 532 - -
Lsi04g01054 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672|GO:0006468
Lsi04g01054 849 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Lsi04g01054 849 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Lsi04g01054 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Lsi04g01054 849 Gene3D Transferase(Phosphotransferase) domain 1 633 837 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02248 Lsi-Chr3:33456316 Lsi04g01054 Lsi-Chr4:12428994 0 dispersed
Lsi04g01054 Lsi-Chr4:12428994 Lsi06g00909 Lsi-Chr6:18797364 1.02E-07 dispersed
Lsi05g00917 Lsi-Chr5:16325642 Lsi04g01054 Lsi-Chr4:12428994 2.03E-34 dispersed
Lsi06g00440 Lsi-Chr6:4813427 Lsi04g01054 Lsi-Chr4:12428994 7.56E-13 dispersed
Lsi04g01054 Lsi-Chr4:12428994 Lsi11g00286 Lsi-Chr11:2954323 5.33E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83575 PF07714 PK_Tyr_Ser-Thr 1.40E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01054 - - csv:101214895 1412.9