Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01057 ATGACGTCTGGTATCTTCAGCAAATTGAAGTTCATAATATCCAGTTCGGTGGCTGAAGCGTGTAATAATTCGATCCTGCTTCTTGGCCCCCGGGGTTCAGGGAAAATGGCGGTGCTGGAACTCGTTCTACAAGATCTATTGCTAGAATATCCCGATATGATTACCGTGATAAAATTGAGTGGTCTTTTGCATTGTGACGACAATGGTGCCTTCAAGGAGATTGCTAGGCAGCTTTGCTCAGAGTATCAATTATTGTTCTCAAAAATGGCATCCTTCGACGATAACTCCCAGTTTATGATAGCTATGCTGCGGGAGTGTGGCTTGGCACACAAGACAATTGTTTTTGTACTCGATGAATTTGATCTTTTTGCACAAGGAAAACAACGGTTACTTTATAGTTTGTTAGATGCCATGCAATCAGTGTCATCACAAGCTGTTGTTATTGGCATCAGTTGTCGATTGGATGCTGATCAGCTACTTGAGAAAAGAGTAAGGTCTCGGTTCTCCCATAGAAAGCTGTTATTTCTTCCTCCCTGCAAGGAAGATGTGGAGAGAACAATTTTGTATGGCCTAACTAATCCTTTTCAAACTTATTCAAAATGGTTTCCCTCTGGTGAAGTACTTGACATTTTGCAGAATATGTTAGCAAATGAGAGATTTAAAAAGATCATTAACACTTACTTGGACTCTGATTCGACCGTCAAACAATTAGTGAGATATCTGTTTTGTGCCATATCAAAGATGGACTTGAAATCTGGGTTGCTGACCCTTGAGAATTTTGAACATGCTCTTTCAGATATTCAGAGGCAGCCAAAGCAGGAATATATAAAAGATTGTTCCATATTGGAGCTCTATATTCTGGCATGCATGAAAAGGTTGGAAGTTAAGGAGCAGAATTCGTATAACTTCAACTCTGTAATGAAAGAGTACAGGAGTATACATGATTCATTCCGGACATCTGATTATTATTCACGAAGTGTATGCTTACGGGCGTTTGAGCATCTTCTACAGCGTGAATTAATCTGTTTCACTGACAATCGTGGACATAATCAATCAGTTGAGTTTCGACCAGTCAAGCTGTTAATAACATCTCATGAACTACATCATGGACTGAAGGCGTATCGTTCATGTCCTACCTTTGGTCTTGTGCAAGGCAGCTCAGGATCAGCAGTAAGGCCCTTATGCGAATATCTTTTTTCGGTTAGTTTTGGCTAG 1215 40.33 MTSGIFSKLKFIISSSVAEACNNSILLLGPRGSGKMAVLELVLQDLLLEYPDMITVIKLSGLLHCDDNGAFKEIARQLCSEYQLLFSKMASFDDNSQFMIAMLRECGLAHKTIVFVLDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVIGISCRLDADQLLEKRVRSRFSHRKLLFLPPCKEDVERTILYGLTNPFQTYSKWFPSGEVLDILQNMLANERFKKIINTYLDSDSTVKQLVRYLFCAISKMDLKSGLLTLENFEHALSDIQRQPKQEYIKDCSILELYILACMKRLEVKEQNSYNFNSVMKEYRSIHDSFRTSDYYSRSVCLRAFEHLLQRELICFTDNRGHNQSVEFRPVKLLITSHELHHGLKAYRSCPTFGLVQGSSGSAVRPLCEYLFSVSFG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12443916 12448466 - Lsi04G010570.1 Lsi04g01057 661106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01057 404 Pfam AAA ATPase domain 8 142 IPR041664 -
Lsi04g01057 404 PIRSF ORC4 4 384 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Lsi04g01057 404 Gene3D - 5 177 IPR027417 -
Lsi04g01057 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 225 IPR027417 -
Lsi04g01057 404 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 211 369 IPR032705 -
Lsi04g01057 404 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 7 379 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01057 K02606 - csv:101220845 649.047