Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01058 ATGGTCAAAACTAAAAGGCGTTTATATGAATTCAAGCATCCATTCAATGATTATCCATTCGAGGCAATGTGCTGTGGGTCTTGGCAAGCTGTGGAGAAAATAAGAATTAGTAATGGTTCAATAACCCTTCACTTAGTGAATGATCAGTTTATGATTTTGGAAAGAGGTCCGTACTCAGATTTCCGGGTTAGGTCGAGACAGGCAACTTCATCCGACTGCACCTGTTTTCTACGACCTGGTGTTGATGTTTGTGTTCTCTCTTCCCATCACAGCATGGATAATTTGGGCGTGAAAGGTTCAGAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAAAGGAGGCCTCATGAAGCTGGGTGTTCATGCCAGTTTTATGTCCAACTGTATGCTGATCAAAAACCCCTTGGTTCAGAGAAAGGATCACTCTGTAAAGAAATTATTGAAATGGGAATTGATCAGATATCTATACTTCAAAGGGTTAGAAAGAACATCTGTGAAGGTCAACACTACCGATGGGATTTCTCTGAGGACTGCTCTCTGTTGCCAAAAACCAAACTACTTTTAGGAAAATTTCTTTCCGACCTTTCGTGGTTAGTAGTTACATCAGCATTGAAACATGTCACTTTTGATGTAAGATCATTGGATAACAAGATATTGTATCAAGTTTTAGAGAGTAACCAAAAGAGCACATCAGTAGCTTCTGACAAGATTTTATATGCTGTAAACTTCAGAGATGATGATGGTATGTTTATTCCAATAATACATCAGCTAGATTCTTCTGATAAGATCGAGATGCCTCCTGCAGAAGATGCATTTGACAATCAACTGCATTCCTTTACTGATCTTATGGACTTGAGGCGTTCAAAACGGCGTAATGTTCAACCTGATCGTTTTCTTGGCTGTGATAGTATCGATGAATCAGAAATTGACTACAGTGGAACCAGAATATATAAAACTGAGCAATTGAATGATGATGAGATGACATTACCACTTGCTTGCCTGTTTGGGACGCCTGGCTCTTCAAAAGCAAAGATTGAAAATGAAAGCAACAACCATTCCAATAAATTGAGTGTACATGATGACCTCTCTGTTTTCAAGTGCAGAATAAAGTCCTTGGAGATGAAATCAGGAACGAGTGACGAAGTAGAAGATAAAAATCAACTTGCTATAGTTCCTTTACTTGATGAACAGCCAATAGCTTCAGATCCATATCCTGATGGTGGCAACGGTTGTGGTAATTATACAAAACAGATAACTGAAATGTCAGCCACATATTATTACATTAACAACAAACGCAAAATCCGAAAAAGAAAGTTTTCGGACTATGAGGATGTGGACTTTGAGAATGATAGCTGTAGGGGAAAAGCTTCAAGCAGTAAAGGTAGGAGGACCAGTTATCATTCCATAAGTTATAAAGAGGATGGTCATCCTAAAGAAAGACCGTGGCAGAAAAGGTCCTTAAGTGCAGGTGCATACAAGGATTTGATCAATTCCTTCTTAAAGAATATAGATTCAACAATTAAAAAAGAAGAGCCACAAATAATCGATCAGTGGAAAGAATTTAAGAACAAAAGCTGCTTGGATAAGAGGATCGAGATGGAAATGCCCTCTAATGAGAATGAGGAAGAAAGCTCTGAGATTGAAATGTTGTGGAGAGAAATGGAAATATCCCTTGCCTCTAGTTACCTTATTGAGGCCAACCAGGGTATTAGTAATGGAACATCAGTGGAGCCTGAACAGAGAGCAACCAAATGGTGCCAGCATGAGTTCAAGTTGAATGAAGAAATTGGGATGCTCTGCCATAAATGTGGTATTGTGAGCACTGAAATTAAAGATGTATCAGCACCATTTATGCAACACATGAGCTGGAGTACAGAAGAGCGGCGGACTGAAGAAAAAGATTCAGAGAACAATACCGACGAAGAGGAGGAAATGAATATTTTCTCTGGCCTTCCTTCTTCTGATGATACCTTATCAGAAGAAAATGACAATGTCTGGGCCTTGATCCCTGAATTCAGAAATAAATTACATCTCCACCAGAAAAAAGCATTTGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCATCTCGTAAAATAGGTGGTTGTGTGATATCTCATACACCGGGAGCTGGAAAAACCTTTCTGATCATCTCATTCCTTGTTAGTTACTTGAAACTGTTCCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTATATACATGGTACAAGGAATTTATTAAGTGGGAAGTTCCTGTACCGATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGGCGAACTCAAAACCAGTGACCTTTGCAGGTCCAAGGCCTACAGATGATGTCATGCACATCTTGGATTGCTTGGAAAAGATAAAAAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTTCTTACATTAATGAGAGAAGATGCAAAGTTTGCACACAGAAAGTACATGGCCAAAGTTTTGCGCCAAAGTCCCGGTATCTTAATATTGGATGAGGGGCATAACCCCAGGAGTACCAAGTCCAGGCTGAGGAAAGTTTTGATGAAAGTTGAAACGGACCTCAGAATACTCCTCTCAGGTACATTGTTTCAAAATAATTTCTGTGAATATTTCAATACCCTTTGCTTGGCAAGACCTAAGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGGAAGAAAAGAAAAGCTCCACACTTGCAAGAAGCTCGGGCAAGGAAATTCTTTCTAGATAAGATAGCTCGGAAAATCGATGCAGGTGATGAAGAAGACAGGAGGGACGGTCTGAACATGTTAAGAAATATGACGGGTGGGTTTATTGATGTTTATGAAGGTGGCAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATACAGCAACAAATTTTGAATAAACTTCACAAGATAATGGCTCAATTCCCTGGATATCCCCTTGAGTTAGAACTCCTCATAACCCTTGGTTCAATACATCCTTGGTTAGTAAAAACTGCAGTTTGTGCAAGCAAATTTTTCAGTGATAGGGAACTGATGGAGCTAGATAGATACAAATTCGATTTGAGGAAAGGATCAAAGGTGATGTTTGTTCTGAATCTTGTGTATCGTGTCGTCAAGAAGGAAAAAATTCTGATCTTCTGCCACAACATTGCACCCGTCAAACTATTCATCGAGCTGTTCGAGAACGTGTTTAGGTGGAAGAGAGGACGAGAAATCTTGGCTCTCACAGGGGACCTTGAGCTGTTTGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCAGTGGGGCCATCCAAAGTTCTTCTTGCTTCAATCACTGCTTGTGCAGAAGGCATTAGTTTGACAGCAGCTTCCCGAGTCATCTTATTAGACTCAGAGTGGAATCCTTCAAAGACAAAGCAGGCCATCGCTCGAGCCTTTCGTCCCGGGCAGCTTAAAGTGGTTTATGTCTATCAACTACTGGTAACTGGCACACTGGAAGAAGACAAGTACAAGAGAACTACATGGAAGGAATGGGTGTCGAGTATGATTTTCAGTGAGGCGTTTGTAGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGACGTTTTGAGGGAGATGGTGGAGGAAGATAGAGTCAAATCGTTTCACATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGGGAAAAGGATTAG 3780 40.37 MVKTKRRLYEFKHPFNDYPFEAMCCGSWQAVEKIRISNGSITLHLVNDQFMILERGPYSDFRVRSRQATSSDCTCFLRPGVDVCVLSSHHSMDNLGVKGSEPVWIDAKISSIERRPHEAGCSCQFYVQLYADQKPLGSEKGSLCKEIIEMGIDQISILQRVRKNICEGQHYRWDFSEDCSLLPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSLDNKILYQVLESNQKSTSVASDKILYAVNFRDDDGMFIPIIHQLDSSDKIEMPPAEDAFDNQLHSFTDLMDLRRSKRRNVQPDRFLGCDSIDESEIDYSGTRIYKTEQLNDDEMTLPLACLFGTPGSSKAKIENESNNHSNKLSVHDDLSVFKCRIKSLEMKSGTSDEVEDKNQLAIVPLLDEQPIASDPYPDGGNGCGNYTKQITEMSATYYYINNKRKIRKRKFSDYEDVDFENDSCRGKASSSKGRRTSYHSISYKEDGHPKERPWQKRSLSAGAYKDLINSFLKNIDSTIKKEEPQIIDQWKEFKNKSCLDKRIEMEMPSNENEEESSEIEMLWREMEISLASSYLIEANQGISNGTSVEPEQRATKWCQHEFKLNEEIGMLCHKCGIVSTEIKDVSAPFMQHMSWSTEERRTEEKDSENNTDEEEEMNIFSGLPSSDDTLSEENDNVWALIPEFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQASRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTFAGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAQFPGYPLELELLITLGSIHPWLVKTAVCASKFFSDRELMELDRYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVKLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDVLREMVEEDRVKSFHMIMKNEKASTVIREKD 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12472193 12480552 + Lsi04G010580.1 Lsi04g01058 661107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01058 1259 CDD SF2_C_SNF 1056 1185 - -
Lsi04g01058 1259 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 702 902 IPR014001 -
Lsi04g01058 1259 MobiDBLite consensus disorder prediction 451 483 - -
Lsi04g01058 1259 CDD DEXHc_ATRX-like 677 941 - -
Lsi04g01058 1259 Gene3D - 1030 1249 IPR027417 -
Lsi04g01058 1259 Pfam Helicase conserved C-terminal domain 1057 1173 IPR001650 -
Lsi04g01058 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 975 1236 IPR027417 -
Lsi04g01058 1259 Pfam SNF2-related domain 676 926 IPR000330 GO:0005524|GO:0140658
Lsi04g01058 1259 Gene3D - 653 941 IPR038718 -
Lsi04g01058 1259 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1253 IPR044567 GO:0080188
Lsi04g01058 1259 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1061 1221 IPR001650 -
Lsi04g01058 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 904 IPR027417 -
Lsi04g01058 1259 MobiDBLite consensus disorder prediction 623 659 - -
Lsi04g01058 1259 SMART helicmild6 1089 1174 IPR001650 -
Lsi04g01058 1259 SMART ultradead3 673 907 IPR014001 -
Lsi04g01058 1259 MobiDBLite consensus disorder prediction 467 483 - -
Lsi04g01058 1259 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1253 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00291 Lsi04g01058 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01058 Lsi-Chr4:12472193 Lsi05g00034 Lsi-Chr5:577055 3.37E-108 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25177 PF00176 SNF2_N 6.40E-17 CL0023 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01058 K10875 - csv:101215377 2312.34