Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01066 ATGGGTGGCAATTCGCCGTGCGCCTCATGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTCTTGTCCATAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTCTCGCAGCTACAGATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAGCAAGACCACCCTGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAATCCCCCTCTCTTCTACTCCCGCCGCCGTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 489 48.26 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKSPSLLLPPPSQCLNFASSPNVIYDTIFGHDIVS 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12673905 12674935 - Lsi04G010660.1 Lsi04g01066 661115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01066 162 Coils Coil 85 105 - -
Lsi04g01066 162 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Lsi04g01066 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Lsi04g01066 162 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Lsi04g01066 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01015 Lsi-Chr2:10457656 Lsi04g01066 Lsi-Chr4:12673905 8.22E-59 dispersed
Lsi04g00812 Lsi-Chr4:7712280 Lsi04g01066 Lsi-Chr4:12673905 4.61E-47 dispersed
Lsi04g01066 Lsi-Chr4:12673905 Lsi10g01525 Lsi-Chr10:19619135 5.06E-50 dispersed
Lsi05g01263 Lsi-Chr5:20403274 Lsi04g01066 Lsi-Chr4:12673905 2.93E-40 transposed
Lsi10g01458 Lsi-Chr10:18689456 Lsi04g01066 Lsi-Chr4:12673905 2.35E-65 transposed
Lsi03g00297 Lsi-Chr3:3602061 Lsi04g01066 Lsi-Chr4:12673905 4.06E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25178 PF03195 LOB 4.90E-42 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01066 - - csv:101204801 308.916