Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01092 | ATGTGCGCAGTTGCAGTGCCGAAGACGACGATGACTCCATTATTCTCGTCTCCAAAGCTCGCTTCACTACTCTACAAGTCCTCCTCTCTCAACTCTTCTTCCTCTTCTTCTTCGTCTTCTTCACCGAGATCGTTGTCCAGTCCGAGGAACCTTCATGTTTCTGCATCGTCTTCCCCGTCGCCGTCGTCTGTGTCGCCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATCGGATGTGGATTTGGAATATTCGAAACGCCGGAGGTCATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATGGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAACGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGAAGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGTGGTGCCTGTTGCGTCACTGCATTGATACGGAACGGAAATCTAGCAGTCTCAAACGTTGGCGATTGCCGCGCTGTGTTGAGCCGAAAGGGAAAAGCGGAAGCCCTAACCTCGGATCACCGGGCGTGCAGAGAAGACGAGAGAAATCGGATTGAAAAATCGGGCGGTTATGTCGATTATTGCCGTGGTGGATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACAAGAGTGATGAAGATCGAAGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGCAGAGGCAATGTGCGGCGCAGAGATAATGAAGAAGAAACCAAATCCGGCATTAATAAAGTCGGCCTGCAAACAGTTAGTGACTTTATCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATTAAATTAAATTCCCTTCATTCCTCAACCTCAATTAATCATCGTCATTAA | 1143 | 48.91 | MCAVAVPKTTMTPLFSSPKLASLLYKSSSLNSSSSSSSSSSPRSLSSPRNLHVSASSSPSPSSVSPVDTVLKRKRPARIDVPPSMPSIGCGFGIFETPEVMEEEGEGYSVYCKRGRRRISAMEDRFSATVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLKTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDYCRGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIAEAMCGAEIMKKKPNPALIKSACKQLVTLSTSRGSIDDTTVMIIKLNSLHSSTSINHRH | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13144851 | 13146518 | - | Lsi04G010920.1 | Lsi04g01092 | 661141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01092 | 380 | MobiDBLite | consensus disorder prediction | 29 | 69 | - | - | |
Lsi04g01092 | 380 | SUPERFAMILY | PP2C-like | 107 | 369 | IPR036457 | - | |
Lsi04g01092 | 380 | Pfam | Protein phosphatase 2C | 120 | 347 | IPR001932 | - | |
Lsi04g01092 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 19 | 369 | - | - | |
Lsi04g01092 | 380 | Gene3D | - | 98 | 373 | IPR036457 | - | |
Lsi04g01092 | 380 | SMART | PP2C_SIG_2 | 127 | 367 | IPR001932 | - | |
Lsi04g01092 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C | 19 | 369 | IPR015655 | GO:0004722|GO:0006470 | |
Lsi04g01092 | 380 | ProSiteProfiles | PPM-type phosphatase domain profile. | 107 | 367 | IPR001932 | - | |
Lsi04g01092 | 380 | MobiDBLite | consensus disorder prediction | 29 | 67 | - | - | |
Lsi04g01092 | 380 | CDD | PP2Cc | 107 | 367 | IPR001932 | - | |
Lsi04g01092 | 380 | ProSitePatterns | PPM-type phosphatase domain signature. | 140 | 148 | IPR000222 | GO:0043169 | |
Lsi04g01092 | 380 | SMART | PP2C_4 | 100 | 365 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01270 | Lsi-Chr2:16896971 | Lsi04g01092 | Lsi-Chr4:13144851 | 1.75E-122 | dispersed | |
Lsi03g00480 | Lsi-Chr3:5460772 | Lsi04g01092 | Lsi-Chr4:13144851 | 5.53E-84 | dispersed | |
Lsi04g01092 | Lsi-Chr4:13144851 | Lsi08g01642 | Lsi-Chr8:24282613 | 3.94E-65 | dispersed | |
Lsi04g01092 | Lsi-Chr4:13144851 | Lsi02g01331 | Lsi-Chr2:17811663 | 5.26E-37 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01092 | K17506 | - | csv:101208170 | 552.747 |