Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01092 ATGTGCGCAGTTGCAGTGCCGAAGACGACGATGACTCCATTATTCTCGTCTCCAAAGCTCGCTTCACTACTCTACAAGTCCTCCTCTCTCAACTCTTCTTCCTCTTCTTCTTCGTCTTCTTCACCGAGATCGTTGTCCAGTCCGAGGAACCTTCATGTTTCTGCATCGTCTTCCCCGTCGCCGTCGTCTGTGTCGCCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATCGGATGTGGATTTGGAATATTCGAAACGCCGGAGGTCATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATGGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAACGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGAAGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGTGGTGCCTGTTGCGTCACTGCATTGATACGGAACGGAAATCTAGCAGTCTCAAACGTTGGCGATTGCCGCGCTGTGTTGAGCCGAAAGGGAAAAGCGGAAGCCCTAACCTCGGATCACCGGGCGTGCAGAGAAGACGAGAGAAATCGGATTGAAAAATCGGGCGGTTATGTCGATTATTGCCGTGGTGGATGGAGAGTTCAAGGAACACTGGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACAAGAGTGATGAAGATCGAAGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGCAGAGGCAATGTGCGGCGCAGAGATAATGAAGAAGAAACCAAATCCGGCATTAATAAAGTCGGCCTGCAAACAGTTAGTGACTTTATCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATTAAATTAAATTCCCTTCATTCCTCAACCTCAATTAATCATCGTCATTAA 1143 48.91 MCAVAVPKTTMTPLFSSPKLASLLYKSSSLNSSSSSSSSSSPRSLSSPRNLHVSASSSPSPSSVSPVDTVLKRKRPARIDVPPSMPSIGCGFGIFETPEVMEEEGEGYSVYCKRGRRRISAMEDRFSATVGIQGDSRQAFFGVFDGHGGAKVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLKTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDYCRGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIAEAMCGAEIMKKKPNPALIKSACKQLVTLSTSRGSIDDTTVMIIKLNSLHSSTSINHRH 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13144851 13146518 - Lsi04G010920.1 Lsi04g01092 661141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01092 380 MobiDBLite consensus disorder prediction 29 69 - -
Lsi04g01092 380 SUPERFAMILY PP2C-like 107 369 IPR036457 -
Lsi04g01092 380 Pfam Protein phosphatase 2C 120 347 IPR001932 -
Lsi04g01092 380 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 19 369 - -
Lsi04g01092 380 Gene3D - 98 373 IPR036457 -
Lsi04g01092 380 SMART PP2C_SIG_2 127 367 IPR001932 -
Lsi04g01092 380 PANTHER PROTEIN PHOSPHATASE 2C 19 369 IPR015655 GO:0004722|GO:0006470
Lsi04g01092 380 ProSiteProfiles PPM-type phosphatase domain profile. 107 367 IPR001932 -
Lsi04g01092 380 MobiDBLite consensus disorder prediction 29 67 - -
Lsi04g01092 380 CDD PP2Cc 107 367 IPR001932 -
Lsi04g01092 380 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Lsi04g01092 380 SMART PP2C_4 100 365 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01270 Lsi-Chr2:16896971 Lsi04g01092 Lsi-Chr4:13144851 1.75E-122 dispersed
Lsi03g00480 Lsi-Chr3:5460772 Lsi04g01092 Lsi-Chr4:13144851 5.53E-84 dispersed
Lsi04g01092 Lsi-Chr4:13144851 Lsi08g01642 Lsi-Chr8:24282613 3.94E-65 dispersed
Lsi04g01092 Lsi-Chr4:13144851 Lsi02g01331 Lsi-Chr2:17811663 5.26E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01092 K17506 - csv:101208170 552.747