Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01095 ATGGAGGATTCCGGCGCCAATGCGGTGATCCAGTTGAGAAATTCCGTCGAGAAATTAGGCTTCTCCGCACAAGATTGCTCCGATGCGACGATGATGAGGTTTCTGATTGCGAGATCGATGGAGATTTCGAAAGCTGTGAAGATGTTCGTACAATGGCGGAAATGGAGAGACGCAATGGTTCCTAAGGGATTCATTAGTGAATCGGAGGTTGAAGATGAGTTGAAAGCTAAGAAGATTTTCTTGCAGGGATTGTCAATTAACCAACTCCCTGTCATGATTGTTTTGGCCAATCGCCATTTTCATTCCAAGGATCAACTTCAATTTAAGAGTTAG 333 44.14 MEDSGANAVIQLRNSVEKLGFSAQDCSDATMMRFLIARSMEISKAVKMFVQWRKWRDAMVPKGFISESEVEDELKAKKIFLQGLSINQLPVMIVLANRHFHSKDQLQFKS 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13248211 13249166 - Lsi04G010950.1 Lsi04g01095 661144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01095 110 Gene3D - 1 109 IPR036865 -
Lsi04g01095 110 PANTHER OS03G0850700 PROTEIN 1 109 - -
Lsi04g01095 110 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 109 - -
Lsi04g01095 110 SUPERFAMILY CRAL/TRIO N-terminal domain 7 63 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01095 - - - csv:101222950 182.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00990 Lsi-Chr4:10760723 Lsi04g01095 Lsi-Chr4:13248211 1.05E-39 dispersed
Lsi04g01095 Lsi-Chr4:13248211 Lsi07g00394 Lsi-Chr7:4212826 5.88E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g505 . . . . . Bpe10g01002 . Bma15g00025 Cmo04g01105 . Cma04g01034 Cma04g00080 Car04g00965 Car04g00080 Sed04g0300 . . Bhi07g00408 Tan04g1492 Cmetu10g0732 Lac13g1311 Hepe01g0602 . . Cla07g00528 Cam07g0570 Cec07g0617 Cco07g0593 Clacu07g0570 Cmu07g0607 Cre07g0940 . . . . Lsi04g01095 . . . Blo06g01032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002811 1 3 1 1 1 2 3 2 2 2 2 2 1 2 2 2 2 0 2 2 2 2 2 2 2 1 2 4 3 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01095 Lsi_Chr04 FPKM 3.09324 4.230346 5.314073 3.590673 6.884023 6.039012 6.000246 3.365829 4.005973 3.770858