Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01097 GTTCTGACGGAAGAAAGAAAGCGGCGAATGCCAATGGCGAAAAACGATGATGAACCGGAGCTTCAGAGCTCCGGCAAGCGTCTAAAATGCTCTAAGCACGATGATGAACACCTCGGTAATGAAGAGGAAGAAGAAGAGCAGGTGAGTGAGCTTCCATTGAAGCCGGGACTTTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCCGATGCTCTCGAGCCCGATTTCCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACCGGATACCGTGCCGATGAGGTCCTTGGCCAGAATTGGTATGACGAGATTCAATTGCGTGATTATTTTAGTTATTTTGTTCTTGTTTTTGCTGGATGTTATAGGAGGCAGAGTCGATTCTTACAATATAGAGATCCTCGTGCACAAAGGCGTCACCCTTTGGTAGATCCGGTGGTTGTTTCTGAAATTAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAACAGGTTACGGCTTGCACCCATACATGATGATGATGGAACTGTAACGCACATTATAGGAATTCAACTGTTTTCTGAGACAAAGATAGACCTCAATCGGTTGTCATATCCCGTCTTCAAAGAAAATTGTACCATAAAATATGATCTATCAGGCAAAACTGCTCATCTGATTGATCAATCACCATTTGGTCACCATAAAGAAATCTGTGGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAACATTTTATCACGCTTGACACCACGAGATGTTGCATCTGTTGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAATAAACTCGGTTGGGGGCGCTTGGCCAGAGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAAATGACAGTTGGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCAGCAGGTAATCGACTTGTATTATTTGGTGGGGAAGGAGTCAATATGCAGCCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTAAGCGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTGGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCTCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCGAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGATAAGCCAACCTGGAGGGAGATTCCCACATCCGGGACACCCCCATCTAGATTGGGACATTCTCTTTCAGTTTATGGTGGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGACACTTACGCTTACGATCAGGTGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCAGTGGAGGCAACTCGAGTGCAGCGCATTCACTGGCATTGGCGGTCAGAGTGCCGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCATGTGGAAGGATTATCATTTTCGGAGGTTCCATTGCCGGGTTACATTCACCTTCTCAACTGTTCCTTTTGGATCCGGCCGAGGAGAAGCCGTCATGGAGGATTCTCAATGTTCCTGGACAACCACCTAAATTTGCTTGGGGGCACAGTACTTGTGTGGTTGGAGGGACAAGAGTTTTGGTATTAGGCGGCCACACCGGGGAAGAGTGGATACTCAATGAATTACACGAACTCTGCTTAGCTAGCAGGCAAGATTCAGATCTTTGA 1986 46.53 VLTEERKRRMPMAKNDDEPELQSSGKRLKCSKHDDEHLGNEEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNWYDEIQLRDYFSYFVLVFAGCYRRQSRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQLFSETKIDLNRLSYPVFKENCTIKYDLSGKTAHLIDQSPFGHHKEICGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTNKLGWGRLARELTTLEAVCWRKMTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGGTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13301322 13304598 + Lsi04G010970.1 Lsi04g01097 661146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01097 661 Pfam F-box domain 248 288 IPR001810 GO:0005515
Lsi04g01097 661 SUPERFAMILY F-box domain 243 304 IPR036047 GO:0005515
Lsi04g01097 661 MobiDBLite consensus disorder prediction 1 38 - -
Lsi04g01097 661 SUPERFAMILY Galactose oxidase, central domain 559 657 IPR011043 -
Lsi04g01097 661 Pfam Kelch motif 566 613 IPR011498 GO:0005515
Lsi04g01097 661 PANTHER ADAGIO PROTEIN 3 124 658 - -
Lsi04g01097 661 Gene3D PAS domain 61 210 - -
Lsi04g01097 661 MobiDBLite consensus disorder prediction 1 46 - -
Lsi04g01097 661 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 124 658 - -
Lsi04g01097 661 Gene3D - 524 656 IPR015915 GO:0005515
Lsi04g01097 661 SUPERFAMILY Kelch motif 329 547 IPR015915 GO:0005515
Lsi04g01097 661 CDD PAS 63 198 IPR000014 -
Lsi04g01097 661 Pfam Galactose oxidase, central domain 456 507 - -
Lsi04g01097 661 Pfam Galactose oxidase, central domain 407 452 - -
Lsi04g01097 661 Gene3D - 243 292 - -
Lsi04g01097 661 Gene3D - 321 523 IPR015915 GO:0005515
Lsi04g01097 661 Pfam Galactose oxidase, central domain 342 392 - -
Lsi04g01097 661 PANTHER ADAGIO PROTEIN 3 20 110 - -
Lsi04g01097 661 Pfam PAS domain 73 198 IPR000014 -
Lsi04g01097 661 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 20 110 - -
Lsi04g01097 661 ProSiteProfiles PAS repeat profile. 79 101 IPR000014 -
Lsi04g01097 661 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 198 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01097 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - csv:101222712 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01097 Lsi-Chr4:13301322 Lsi11g00763 Lsi-Chr11:8604444 0 dispersed
Lsi04g01097 Lsi-Chr4:13301322 Lsi10g00018 Lsi-Chr10:296026 2.85E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01097 Lsi_Chr04 FPKM 0.286667 0.325737 0.0 0.0 0.0 0.0 0.456582 0.0 0.621584 0.0