Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01101 ATGATGGCGGAGATTTCTGGCGATGGAGGTGGGTTTTTGCCGGAGGTTAGTAATGGACGGGGAGTGGATTCTCAGGCTACGCCGACGCCGATTACGGCACCGAATCCGACGCCCTTGACGGTGTCGGGATCTTTCAAAGAAGGGAAAAGCTCGTCGCGGCGCCGGACGTCGGTCAGGCCGAGTATGGACGCCGACGACTTCTTGAACTTGTTGCACGGCTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTGCGAGATAAGGATAGAGAGCTCGGAGAAGCTCAGGCGAAGATCAAGGCTTTGAAGTTGTCCGAACGGCTTAGAGAAAAGGCAGTTGAAGAGCTGACTGAAGAACTATCAAGGGCTGCGGAGAAATTAAAGTTGACAGAATCTCTTCTTGAAAGCAAGAATCTTGAAATAAAGAAAATCAATGATGAGAAGAAGGCTTCAATGGCAGCTCAATTTGCTGCTGAAGCCACTCTTAGGAGGGTACATGCTGCTCAAAAGGATGATGACATGCCTCCAATTGAAGCCATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCACGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTGGATCGTCTTACCAAATCAAAGGAAGCAGCTTTGATTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCCAAGGCTTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTAATGAAACAGATTGAGATTTGCCAGGAAGAAAATAAAATCTTGGATAAGATGCACAGACAGAAAGTTGCAGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTGGAGGAGGCTGTTCTTGCTGGTGGTGCAGCAGCAAATGCTGAGGAAAGGAAAACTCTTGACAGAGAGTTGGCTCGTGCAAAGGTAACAGCCAACAGAGTGGCTGTTGTAGTAGCAAATGAATGGAAAGATGCAAATGATAAGGTTATGCCAGTAAAACAATGGCTTGAAGAACGAAGATTCTTGCAGGGAGAAATGCAGCAACTTCGTGATAAACTGGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAATTGAAAGAGAAGTATCAACTGCGACTTAGAGTGCTTGAAGAGAGTTTGAGAGGGTCTTCTGGTGGTAACAATCGAAGTACTACAGAAGGGAGAAGTGTAAGCAATGGCCCCTCTCGTCGGCAATCTCTGGGTGGTGTTGACAACATTTCAAAATTAACTTCCAATGGATATTTATCCAAAAGGACACCAGGTTCTCAGTTTAGATCTTTGTCCTCGAGCAGCAGCACAGTGTTGAAACATGCTAAAGGCACGTCAAAATCATTTGATGGAGGCACGAGGTCATTGGACCGAGGAAAGGTGTCATTAAATGGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAACCAAGGACAGTGAAGTAAATAATGATTGGAAAAGTAATCCAGATGAAAAAGGAAATGAGTCCCCAACACTTGAGAGTGAAGACAGTGTTCCGGGCATGTTGTATGATTTACTTCAAAAGGAGGTTATAGCTTTGAGAAAAGCTGGTCATGAGAAAGATCAAAGCCTTAAAGACAAGGATGATGCCATTGAGGTTGATGTTCTGGACAAGCTTGTTTACATTTATGATTTATGCAGTTTATTCTTTCTAGGCGAGTCTCATAGATCGTTAACTTCTTTTATGGTGTTGGTGCTCGATGTTTTCCAGATGTTAGCAAAGAAGGTAGAGACGCTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTGGAGAAAGAGCAGGAGAACAGGGCAAAGCGATTTGGTGGTAGCACGAAGGGTCCTGTTAGTGCAGCACAACTGCTTCCTGGAAGGTATTAA 1950 45.28 MMAEISGDGGGFLPEVSNGRGVDSQATPTPITAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDADDFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAKIKALKLSERLREKAVEELTEELSRAAEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLRVLEESLRGSSGGNNRSTTEGRSVSNGPSRRQSLGGVDNISKLTSNGYLSKRTPGSQFRSLSSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNGLLPSYSFNQSCDATKDSEVNNDWKSNPDEKGNESPTLESEDSVPGMLYDLLQKEVIALRKAGHEKDQSLKDKDDAIEVDVLDKLVYIYDLCSLFFLGESHRSLTSFMVLVLDVFQMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFGGSTKGPVSAAQLLPGRY 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13649677 13654678 + Lsi04G011010.1 Lsi04g01101 661150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01101 649 Coils Coil 116 150 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 1 62 - -
Lsi04g01101 649 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 581 647 - -
Lsi04g01101 649 Coils Coil 587 628 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 486 505 - -
Lsi04g01101 649 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 581 647 IPR009768 GO:0007010|GO:0008017
Lsi04g01101 649 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 32 547 IPR009768 GO:0007010|GO:0008017
Lsi04g01101 649 Coils Coil 236 284 - -
Lsi04g01101 649 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 32 547 - -
Lsi04g01101 649 Coils Coil 332 359 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 382 456 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 20 47 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 381 459 - -
Lsi04g01101 649 MobiDBLite consensus disorder prediction 481 510 - -
Lsi04g01101 649 Coils Coil 184 211 - -
Lsi04g01101 649 Pfam Microtubule-associated protein 70 581 643 IPR009768 GO:0007010|GO:0008017
Lsi04g01101 649 Pfam Microtubule-associated protein 70 65 547 IPR009768 GO:0007010|GO:0008017
Lsi04g01101 649 Coils Coil 81 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01101 - - - csv:101212718 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00495 Lsi-Chr1:4070470 Lsi04g01101 Lsi-Chr4:13649677 6.20E-113 dispersed
Lsi01g01778 Lsi-Chr1:16854607 Lsi04g01101 Lsi-Chr4:13649677 1.05E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01101 Lsi_Chr04 FPKM 11.44069 13.224377 31.221079 34.15942 18.950785 18.453354 19.012835 15.90338 14.188938 15.360183