Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01102 CCGGTCTTCCTATTTCCCCTCCGCCGTTCCCGTCGCCACCGGCCAATGCGCATTCCTACTGCCTTCAACGCCCTCAAATCCTCTAGGTCAATATCTTGGTCGCCGGTACTCTCTCTCTCTCCCTCCATAGAAATGATGGGAACATTACCCTATTCCCAGTTTTCGTACTCACTAGTGCGATCATTCTTGGTTGCCGCTTCGCTTCTTTTTGTTGTAGACGGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGATGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAAAGTGAAGTTATGTCCAGAATTTGCAGGCAGAGGGAGGTATTTTGATTTCAAGTCCAACTTCATTCCTGCATCGATCGATTATGCCGAAGAGTCGCCTCTTTGTACCACGCTTTCTAAGGACGGGTTTAAAATTCGAACAGTTGAGCATTTGCTTTCTGCCATGGAGGCAATGGGGGTTGACAATTGTAGGATCGAGATAACGAATGAAGATTCTAAAGACAGTGAAGTCGAGGTTCCAATTTTTGATGGATCTGCGGGTAAATGGGTGGATGCAATAGAGGAGATTGGTCTTAAGTTGGCTATAGACCAGTGTGGCAACTGCTGTGAGAAAATGGCACCATATGTAAATCAACCTGTCCATGTGTGGAGGAACGACTGTTATCTTGTTGCTTTTCCAGCCTCAGGAGTTCGTATCACTTATGGAATTGACTTTCCTCAGGTGCCTGACATTGGCTGCCAATGGTTTACTACTACCCCTTTGGACAACATGTTCTATGCCGAGCAAATAGCCCCATCAAGAACCTTTTGCATTTACGAGGAGGTAGAGCAAATGCGTAATATGGGACTCATAAGAGGAGGCTCAATAGAAAATGCTTTAGTTTGCAGTGTCAGCAAAGGTTGGATCAATCCCCCATTGCGTTTCCATGATGAACCTTGCCGCCACAAAGTTTTAGATTTAATTGGCGATCTCTCACTTTTTGCACAGTTGGGCAGTCAAGGGATTCCAGTGGCACACATAGTGGTTTACAAGGGTGGTCATGCTATGCACGCCAATTTTGTTCGCCGCTTATCGGAAAAGATTCGAGTGGACAAGTAG 1107 46.61 PVFLFPLRRSRRHRPMRIPTAFNALKSSRSISWSPVLSLSPSIEMMGTLPYSQFSYSLVRSFLVAASLLFVVDGLQQTLAGCLEMSGISLHSGKVSKVKLCPEFAGRGRYFDFKSNFIPASIDYAEESPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIEITNEDSKDSEVEVPIFDGSAGKWVDAIEEIGLKLAIDQCGNCCEKMAPYVNQPVHVWRNDCYLVAFPASGVRITYGIDFPQVPDIGCQWFTTTPLDNMFYAEQIAPSRTFCIYEEVEQMRNMGLIRGGSIENALVCSVSKGWINPPLRFHDEPCRHKVLDLIGDLSLFAQLGSQGIPVAHIVVYKGGHAMHANFVRRLSEKIRVDK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13671606 13719246 - Lsi04G011020.1 Lsi04g01102 661151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01102 368 Gene3D lpxc deacetylase, domain 1 75 199 IPR015870 GO:0008759|GO:0009245
Lsi04g01102 368 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 74 365 IPR004463 GO:0008759|GO:0009245
Lsi04g01102 368 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 16 364 IPR004463 GO:0008759|GO:0009245
Lsi04g01102 368 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 76 364 IPR004463 GO:0008759|GO:0009245
Lsi04g01102 368 SUPERFAMILY Ribosomal protein S5 domain 2-like 75 194 IPR020568 -
Lsi04g01102 368 SUPERFAMILY Ribosomal protein S5 domain 2-like 214 362 IPR020568 -
Lsi04g01102 368 Gene3D lpxc deacetylase, domain 2 211 368 IPR011334 GO:0008759|GO:0009245
Lsi04g01102 368 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 76 361 IPR004463 GO:0008759|GO:0009245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01102 K02535 - csv:101205101 577.4