Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01104 ATGGCATTGGACGAGGACGTCGTGCTGCGCGATGTCACCAATGCTGGTGTTGTCATCAGCGACCGCATTGCCAGAGAAGTTGCCACTCAGCTTGATCTGGAGGAAGCGCTGGAAGCTTCCAGATACGCTAGCGATCCGTATACAACCCACCCCAGAGAGTGGCCTCCTCTAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTTATAGAAAGATATAATGCCGCTGGAGGGGAAGGAACTGCCTTATGTGGAATATTTCCGGAAATACGAAGAGCTTGGGCATCTGTTGATAATTCTTTATTTCTTTGGCGATTTGACAAGCGGGATGGTCAATGTCCTGAGTTTAATGTGGAGGAGCAAGCCATATGTGCTGTTGGCCTCACCAAATCCAAGCCTGGAGTTTTTGTTGAGGCAATACAATATCTTTTAATTCTAGCTACACCAGCAGAGTTGATTCTTGTAGGAGTATGCTCTTCTGGTGGTGCTGATGGTATGGATCCATATGCAGAGATTTCGCTCCAGCCCTTGCCAGAGTATACTATTGCGTCAGATGGAGTCACTATGACTTGCATCACTTGCACTGATAAAGGACGAATTTTTTTGGCTGGCCGTGATGGCAACATTTATGAGCTTCATTACACATCTGGTTCTGGTTGGCAAAAGCGATGTCGTAAAATTTGCCTTACTTCTGGTTTAGGAAGTGTGATATCAAGATGGGTTGTGCCAAATGTATTCAAGTTTGGAGCCGTTGATCCTATTGTTGAAATGATCTATGATAGTGAAAGATGCATTTTATATACAAGAACTGAGGAAATGAAAGTTCAAGTATTTGTGTTGGGATCTGGTGGTGATGGACCGCTTAAGAAAGTAGCAGAAGAAAGAAATCTGATCAATCAGAGAAATGGATCTTATGGAAGTAGACAGTCAAAAGGACCTAGATCTATGAGTCGATCAACAATGCCATCTATTGTCTCCATGTCACTCTTATCTACGCTTGAATCAAAGTCATTACATCTTCTAGCAGTTTTATCAGATGGTAGAAGGATGTATTTAACCACTTCACCATCAAACGGAAACTTGGGTGCATATAATTCCAGCCATCAGACGCCAAGTTGTTTAAAAGTTGTGGCTACTAGGCCTTCTCCTCCTCTAGGTGTTGGTGGAGGACTTACATTTGGTGCCAACTCTGTTTCTGGTAGACCTCAAAATGAAGAGCTGTTGCCAAAGGTCGAGACAGCATTTTACTCTGCTGGGACTCTAGTCCTCTCTGATTCGTCACCACCAACTATATCTTCACTTCTTCTTGTGAGCAAGGATCCGGTAGCACAATCTTCCATATCTGGTACTTCAGCCTTAAATGCAAGGACTCCTTTTGCTTTAAGGGAAATTGTTTCTTCTCTTCCTGTTGAAGGTCGAATGCTTTTTGTAGCAGATGTTTTACCCTTACCAGATGCTGCAGCCACTATGCAGTCTTTATATTCACAGATTGAATTTGGGGTGTCAGATTTCCCAGATGAGCATAGTGAAAAAGCAGTTGGAAAACTATGGGCAAGAGGAGACCTATCTACCCAACACATATTACCTAGGAGGAGACTTGTTGTATTCAGTACCATGGGCATGATGGATATAGCTTTCAACAGGCCTGTGGATATTTTGAGAAGGTTGTTTGAGTCTAATTCGCCAAGATCAATTTTAGAAGACTTCTTCAAAAGGTTTGGAGCTGGTGAAGCAGCTGCCATGTGTCTAATGTTGGCTTCAAGGATTGTCCACTGTGAAAGTCTCATAACCAATGTTATTGCAGACAAGGCAGGTGAAGCTTTCGAGGATCCAAGAATTGTTGGGATGCCTCAACTTGGAGGCAATACTGCCTTGTCAGACACAAGAACTGCTGCTGCTGGGTTTAGCATGGGTCAGGTTGCTCAGGAGGCTGTGCCAGTATTTTCAGGTGCACATGAAGGGCTCTGCTTGTGTTCATCAAGATTACTTTTTCCACTCTGGGAACTTCCTTTCGTGGCTGTTAAAGGTATCTCAGATTCTACAACTACTTCACACAATGGATTAGTTGTATGTAGGCTTTCTGCTGGAGCCATGCAAATCCTTGAGAACAAGCTCCGTGCTCTTGAAAAGTTCCTAAGGTCGAGAAGGAACCAAAGAAGAGGTCTTTATGGTTGTGTAGCTGGCTTGGGAGATGTTACAGGTTCTATTCTTTATGGTAGTGGTTCAGATCTTGTTTCCAATGATCGGAATATGGTGAAAAGCATTTTTGGTACATACACAAGAAACATGGAATCTGCTGGGACTGGAACTTCTAATAAAAGGCAGAGATTACCTTACAGTCCTGCTGAGTTGGCGGCCATGGAGGTTAGGGCAATGGAATGTATTAGGCAACTGCTTCTTAGATCTGCTGAAGCTTTATTTTTGCTTCAGCTTCTTTCTCAACACCACTTAACACGCTTGGTTCAGGGCTTGGATGATAGTTTTAGGCAGGCAATAGCTCAATTGACTTTTAATCAGCTTGTTTGTTCAGCAGAGGGTGATAATCTTGCTACAAGACTTATATCTACTCTAATGCAGTACTATACTGGTCCTGATGGGAGAGGAACTGTAGATGACATTAGTGGGAGATTAAGGGAAGGCTGTCCAAGCTACTTTAAAGAGTCTGACTATAAATTTTTCTTAGCCGTGGAATGTCTGGAGAGAGCTGCTGTAACTCTTGACCCAATGGAGAAAGAGAATCTTGCTAGGGAAGCCTTTAATTGTTTGAGTAAAATTCCAGAGTCTGCAGATTTACGAACTGTATGCAAACGTTTTGAGGATTTGAGATTCTATGAAGCAGTAGTTCGTTTGCCTCTGCAGAAAGCCCAGGCTCTTGACCCTGGAGGCAATGCTTTTAATGATCAAACTGATTTGGCTGCTCGAGAACGTGCACTTTCCGAGCGTGAACAGTGCTATGAAATAATTATAAGTGCTCTACGTTCACTAAAAGGCGATGTCTCACTGAAGGAATTTGGGTCTCCTATGAAGCCTGCTGCTTCAAGGTCCATTCCCGATATGGCAACACGTAGTAAATATATATGCCAGATTGTTCAGCTTGGAGTTCAATCCCCAGATAAAATTTTCCATGATTACTTGTATCGGTCTATGATTGATTTGGGGCTTGACAATGAGTTGTTAGAATATGGAGGACCAGATTTGGTACCGTTCCTACAAAATGCTGGGCGGCATCCCATACAAGAGGTTCGAGCTGTCTCAGCTCTAACAGCTGGGGCTTCTCCAATTGGTCAGTTGGGAGCAGTTGGTGCAACAAATGAAGCCAAATTTTTTGATCTTTTAGCTCGATATTATGTTATGAAGCGGCAACATTTGCTTGCTGCTCATGTGCTGCTAAGACTAGCTAGTAGACGCGCATCTGAACCTGGGGATGTTCTTACTTTGGAGGAGAGGTGCCAATACTTGAGCAATGCAGTTTTACAAGCAAAGAATGCAAACAGTAGCAAGGGGTTGGCAGGTTCTACCCCTGATACCTTTGACAATGGATTGCTTGAACAACTTGAAGGGAAACTTGCTGTTCTTCGTTTCCAGATGAAAATTAAGGAGGAGCTGGAGGCTTTAGCTTCAAGAATAGAAGCCGTGGCAAGTACATCTGATTCAGTCCAAAATGAAATGATCCCAGATAATGATTTGGCTGCTAATTCCAGTATTGCAAATACGGCTCGGCAAAAGGCTAAAGAGCTCTCATTGGAGTTAAAGACTATAACTCAGCTATACAATGAATATGCTGTTCCATTTGAGCTATGGGAGATATGTTTGGAAATGTTGTACTTTGCAAACTATTCTTCTGATGGCAATACTAGTATTGTCAGAGAAACCTGGGCTCGATTAATTGACCAAGCTCTATCTATGGGTGGCATCGCTGAAGCTTGTTCTGTACTTAAAAGGGTTGGCTTCCACATTTACCCTGGCGATGGAGCTGGAATACCTTTGGAGTCCCTTTGTCTTCACCTTGAGAAGGCTGCATTGGAGAGATCAGACTCAGGTGTTGAATCTATTGGGAACGATGATGTTGCAAGAGCCCTTATTGCTGTTTGCAAGGGTGCAACTGAGCCAGTATTGAATGCTTATGATCAATTGTTGTTGAATGGTGCAATTCTGCCATCACCCAAACTCAGGTTGCGCCTCCTCCAATCTGTGTTAGTGGTACTCCATGAGTGGGCTATGTCAATATCTTCACAGACTGTGGGTAGAAGTGCAACTGCAGCATCTCTAGTTCTTGCTGGAAAATACTCTTTGGATCAAATAGCTACTTTCAACCAAGGGGTTCGGGACAAGATAGCCAGCGCTGCTAACAGGTCAATTTCATGA 4368 43.38 MALDEDVVLRDVTNAGVVISDRIAREVATQLDLEEALEASRYASDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKRDGQCPEFNVEEQAICAVGLTKSKPGVFVEAIQYLLILATPAELILVGVCSSGGADGMDPYAEISLQPLPEYTIASDGVTMTCITCTDKGRIFLAGRDGNIYELHYTSGSGWQKRCRKICLTSGLGSVISRWVVPNVFKFGAVDPIVEMIYDSERCILYTRTEEMKVQVFVLGSGGDGPLKKVAEERNLINQRNGSYGSRQSKGPRSMSRSTMPSIVSMSLLSTLESKSLHLLAVLSDGRRMYLTTSPSNGNLGAYNSSHQTPSCLKVVATRPSPPLGVGGGLTFGANSVSGRPQNEELLPKVETAFYSAGTLVLSDSSPPTISSLLLVSKDPVAQSSISGTSALNARTPFALREIVSSLPVEGRMLFVADVLPLPDAAATMQSLYSQIEFGVSDFPDEHSEKAVGKLWARGDLSTQHILPRRRLVVFSTMGMMDIAFNRPVDILRRLFESNSPRSILEDFFKRFGAGEAAAMCLMLASRIVHCESLITNVIADKAGEAFEDPRIVGMPQLGGNTALSDTRTAAAGFSMGQVAQEAVPVFSGAHEGLCLCSSRLLFPLWELPFVAVKGISDSTTTSHNGLVVCRLSAGAMQILENKLRALEKFLRSRRNQRRGLYGCVAGLGDVTGSILYGSGSDLVSNDRNMVKSIFGTYTRNMESAGTGTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQLLSQHHLTRLVQGLDDSFRQAIAQLTFNQLVCSAEGDNLATRLISTLMQYYTGPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTLDPMEKENLAREAFNCLSKIPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPGGNAFNDQTDLAARERALSEREQCYEIIISALRSLKGDVSLKEFGSPMKPAASRSIPDMATRSKYICQIVQLGVQSPDKIFHDYLYRSMIDLGLDNELLEYGGPDLVPFLQNAGRHPIQEVRAVSALTAGASPIGQLGAVGATNEAKFFDLLARYYVMKRQHLLAAHVLLRLASRRASEPGDVLTLEERCQYLSNAVLQAKNANSSKGLAGSTPDTFDNGLLEQLEGKLAVLRFQMKIKEELEALASRIEAVASTSDSVQNEMIPDNDLAANSSIANTARQKAKELSLELKTITQLYNEYAVPFELWEICLEMLYFANYSSDGNTSIVRETWARLIDQALSMGGIAEACSVLKRVGFHIYPGDGAGIPLESLCLHLEKAALERSDSGVESIGNDDVARALIAVCKGATEPVLNAYDQLLLNGAILPSPKLRLRLLQSVLVVLHEWAMSISSQTVGRSATAASLVLAGKYSLDQIATFNQGVRDKIASAANRSIS 1455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13817306 13829083 + Lsi04G011040.1 Lsi04g01104 661153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01104 1455 Coils Coil 1183 1203 - -
Lsi04g01104 1455 MobiDBLite consensus disorder prediction 300 320 - -
Lsi04g01104 1455 Coils Coil 699 719 - -
Lsi04g01104 1455 PANTHER BNAC05G49530D PROTEIN 3 1453 - -
Lsi04g01104 1455 Gene3D - 893 1052 IPR042533 -
Lsi04g01104 1455 Gene3D Nucleoporin, helical domain, central subdomain 1056 1158 IPR042537 -
Lsi04g01104 1455 Pfam Nup133 N terminal like 54 508 IPR014908 -
Lsi04g01104 1455 Gene3D - 531 882 - -
Lsi04g01104 1455 Gene3D - 1183 1440 IPR042538 -
Lsi04g01104 1455 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 3 1453 IPR004870 GO:0005643|GO:0006913|GO:0017056
Lsi04g01104 1455 Coils Coil 1237 1257 - -
Lsi04g01104 1455 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 876 1296 IPR007187 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01104 K14312 NUP155, NUP170, NUP157; nuclear pore complex protein Nup155 - csv:101212476 2699.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g495 . . . . . . Bma14g01933 Bma15g00028 . . . . . . . . . Bhi07g00386 . . . . . . Cla07g00539 Cam07g0580 Cec07g0641 Cco07g0607 Clacu07g0584 Cmu07g0619 Cre07g0955 . . . . Lsi04g01104 . . Cme10g01618 . . Bda07g01751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007657 2 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01104 Lsi_Chr04 FPKM 305.042877 316.611176 299.152771 286.726471 311.456879 360.777527 305.193878 328.055054 344.767456 328.525604