Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01105 ATGTGGTGTGGTTCATTAATGTATGCATCCTCTACTTCGAAGCCACAAAAGCTTAGAACAAAAACTGATTTAGCCCTAAGAGTGTTCTTAGGGTCTGATATGGCTGATGCTCTCTCTGTTATTCCTGCATTTGTGCTCCGAAACCTCTCTGATAAACTCTATGAGAAACGGAAGAACGCTGCTCTTGAGGTTGAGGGAATTGTGAAGCAACTTGCGTCGGCAGGAGATCATGAGAAGATTACGGCGGTTATCAATCTGCTGACTAACGATTTCACTATGTCGCCTCAAGCGAATCATAGGAAGGGAGGATTGATAGGGCTTGCGGCTGCAACTGTTGGATTGTCTTCTGATGCATCTCAACATCTTGAGCAAATTGTACCTCCTGTGCTCAATTCTTTTTCTGATCAAGATAGCAGAGTACGTTATTATGCATGTGAAGCTCTATACAATATCGCAAAGGTTGTCAGAGGCGATTTTATAGTTTTTTTTAACCAGATATTTGATGCCTTATGTAAGCTTTCGGCTGATTCAGATGCCAATGTACAAAGTGCTGCTCATCTCTTGGATCGGCTTGTGAAGGATATTGTTACCGAAAGTGATCAGTTCAGCATTGAAGAGTTTATTCCATTGCTGAGGGAGCGTATGAATGTCCTAAATCCCTATGTCCGTCAGTTTTTGGTTGGATGGATCACTGTACTTGATAGCGTGCCAGATATTGATATGTTGGGCTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGTTGAGTGATTCAAGTCATGAAATCCGGCAGCAAGCTGATTCTGCTCTTTCGGAGTTTCTCCAAGAGATAAAGAATTCTCCATCTGTAGATTATGGCCGAATGGCTGAGATTCTGGTCCAGAGGGCTTCTTCCCCAGACGAATTTACTCGCTTAACGGCTATTACATGGATTAACGAGTTTGTAAAACTCGGTGGAGATCAACTAGTACCTTATTATGCTGATATTCTAGGAGCAATTCTACCTTCCATAGCTGATAAAGAAGAGAAGATTAGAGTGGTTGCTCGGGAAACTAATGAAGAGCTTCGTAATATCAAGGCATTTCCATCCGAAGGATTTGATGTTGGTGCTATCCTTTCTATTGCTAGGAGACAATTATCTAGCGAACATGAGGCTACTAGGATTGAAGCATTGTATTGGATATCAACACTTCTAGACAGACATCGAACTGAGGTATTGATCTATTTGGATGATATACTTGACAGCCTTCTTCAAGCGCTATCTGATCCTTCTGATGAGGTGGTGCTCCTTGTTCTCGATGTTCATGCTTGCATAGCAATAGATCAGCAACATTTTCGCCAACTTGTTGTCTTCCTAGTGCATAATTTTCGGATCAATAATTCTCTTCTGGAGAAGCGTGGTGCATTGATAATACGCCGGTTATGTGTACTTTTAAATGCTGAACGGGTCTACCGTGAACTTTCTACAATATTGGAAGGAGAATCAGATTTGGATTTTGCTTCTATTATGGTTCAGGCACTCAATTTGATTTTGCTGACTTCCTCTGAGTTATCTGGTCTTCGAGATCTTTTAAAGAAATCATTGGTGCATGCAGCTGGGAAGGACCTTTTTGTTTCTTTATATGCATCGTGGTGTCATTCCCCCATGGCTATTATTAGTCTTTGCTTATTAGCACAGTCATACCAGCATGCTAGTGTGGTGATTCAGTCTTTGGTGGAGGAAGATATTAATGTGAAATTTTTAGTTCAGCTGGATAAACTGATTCGCCTTCTGGAGACTCCAGTCTTTGCTTATCTAAGATTGCAGCTTCTCGAACCTGGAAGATATATGTGGCTGTTAAAAGCATTATACGGTCTTCTAATGTTACTTCCCCAGCAAAGTGCCGCCTTTAAGATACTACGAACACGTCTCAAAACAGTGCCTCCGTACTCGTTTGGTGGCGAGCACTTCAAGCAATCATCATCCGGGAACTCCTACTCTGTAATGCATCACATGTCTGGGTTGAATATAAATGAAGATGGTGATGTAAGCCAGGATGCTGGGAACTCTCATGATGGAATTAACTTTGCTGCTAGGCTACAACAATTTGAGCACATGCAGCATCAACATCGCTTACATGAAAAAGAGCAGACACTGTCACGGACCAGTACTTCACCTCCGCTAACAATAACGGGGGTTGAAATCCCAGAAGAAACAAAGCGGCCGGCCCCGGCCCCAACCTCAGCTGCATTAGCAGAGATAAACAGGCCTCCTTCAAGATCAAGGAGAGGGCCAGGGCAATTACAGTTATGA 2295 42.31 MWCGSLMYASSTSKPQKLRTKTDLALRVFLGSDMADALSVIPAFVLRNLSDKLYEKRKNAALEVEGIVKQLASAGDHEKITAVINLLTNDFTMSPQANHRKGGLIGLAAATVGLSSDASQHLEQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRASSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPSIADKEEKIRVVARETNEELRNIKAFPSEGFDVGAILSIARRQLSSEHEATRIEALYWISTLLDRHRTEVLIYLDDILDSLLQALSDPSDEVVLLVLDVHACIAIDQQHFRQLVVFLVHNFRINNSLLEKRGALIIRRLCVLLNAERVYRELSTILEGESDLDFASIMVQALNLILLTSSELSGLRDLLKKSLVHAAGKDLFVSLYASWCHSPMAIISLCLLAQSYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPVFAYLRLQLLEPGRYMWLLKALYGLLMLLPQQSAAFKILRTRLKTVPPYSFGGEHFKQSSSGNSYSVMHHMSGLNINEDGDVSQDAGNSHDGINFAARLQQFEHMQHQHRLHEKEQTLSRTSTSPPLTITGVEIPEETKRPAPAPTSAALAEINRPPSRSRRGPGQLQL 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13871495 13895801 + Lsi04G011050.1 Lsi04g01105 661154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01105 764 Pfam Vacuolar protein 14 C-terminal Fig4p binding 462 641 IPR021841 -
Lsi04g01105 764 PANTHER PROTEIN VAC14 HOMOLOG 37 718 - -
Lsi04g01105 764 SUPERFAMILY ARM repeat 36 562 IPR016024 -
Lsi04g01105 764 Pfam Vacuolar 14 Fab1-binding region 98 194 - -
Lsi04g01105 764 PANTHER TAX1 BINDING PROTEIN-RELATED 37 718 IPR026825 GO:0006661|GO:0070772
Lsi04g01105 764 Gene3D - 32 280 IPR011989 -
Lsi04g01105 764 Coils Coil 762 764 - -
Lsi04g01105 764 ProSiteProfiles HEAT repeat profile. 125 160 IPR021133 -
Lsi04g01105 764 MobiDBLite consensus disorder prediction 700 764 - -
Lsi04g01105 764 Gene3D - 281 450 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01105 K15305 VAC14, TAX1BP2; vacuole morphology and inheritance protein 14 - csv:101214803 1341.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g493 Blo01g00771 Blo16g00753 Bda01g01796 Bda11g00185 Bpe13g01008 . . . Cmo04g01097 . Cma04g01022 Cma04g00076 Car04g00956 Car04g00072 Sed06g0157 . . Bhi07g00384 Tan04g1517 Cmetu10g0436 Lac13g1343 . . . Cla07g00543 Cam07g0582 Cec07g0645 Cco07g0610 Clacu07g0585 Cmu07g0620 Cre07g0956 . . Cone6ag0363 Cone9ag0394 Lsi04g01105 . . Cme10g01616 . . . Bda11g00185 . . Bma01g00488 Bma06g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003068 2 1 2 2 1 1 3 1 1 0 1 1 2 2 1 3 1 4 2 1 1 2 1 3 1 1 1 5 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01105 Lsi_Chr04 FPKM 7.350447 6.790373 5.508156 5.145906 10.305774 11.892175 9.136481 7.280429 7.030803 7.324762