Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g01109 | ATGGCTGAACTGTCGAAGAATGTCTCGTCAAGCCCCAACGGAGAAAGCGAGAAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGATAGGAACGAAGACGGCGTCGTTTATCCATGGGAAACCTTCAAGGGTTTCCGAGCAATTGGAGCCAATTTCTTGTTGTCCACTGTCAGTGCTGTTTTTATTAACATTGGACTCAGCTCTAAAACCCGACCGGGGAAGTTTCCTAATTTTCTGTTCCCAATTGAGATAAAGAACATTCAACTTGCCAAACATGGAAGTGATTCTGGTGTATATGATTCTGAGGGAAGATTTGTTGCTAAGAAATTTGAAGAAATTTTCAAGAAACATGCCCTTACCTATCCAGATGCCTTAACACAAGAAGAACTTAAAGCCTTGCTTAAGGCAAACAGAGAGCCTAAAGACTACAAAGGATGGGTTGCTGCATGGGCAGAATGGACAACTCTATACAGCCTTTGCAAAGATGAGAATGGTTTACTTAAAATGGAAACTGTGAAGGCTGTTTATGATGGAAGCTTATTTGAACATATGGAGAAAGAAAGAGCATCAAAAAAGAAGAAATGA | 585 | 41.37 | MAELSKNVSSSPNGESEKNVLQKHVAFFDRNEDGVVYPWETFKGFRAIGANFLLSTVSAVFINIGLSSKTRPGKFPNFLFPIEIKNIQLAKHGSDSGVYDSEGRFVAKKFEEIFKKHALTYPDALTQEELKALLKANREPKDYKGWVAAWAEWTTLYSLCKDENGLLKMETVKAVYDGSLFEHMEKERASKKKK | 194 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 14073427 | 14079895 | + | Lsi04G011090.1 | Lsi04g01109 | 661158 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g01109 | 194 | Pfam | Caleosin related protein | 17 | 184 | IPR007736 | - | |
| Lsi04g01109 | 194 | SUPERFAMILY | EF-hand | 15 | 165 | IPR011992 | - | |
| Lsi04g01109 | 194 | PANTHER | INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED | 12 | 194 | - | - | |
| Lsi04g01109 | 194 | PANTHER | PEROXYGENASE 3-RELATED | 12 | 194 | IPR007736 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01109 | Lsi-Chr4:14073427 | Lsi11g00893 | Lsi-Chr11:11853629 | 3.06E-56 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g01109 | K17991 | - | csv:101213829 | 352.058 |