Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01112 ATGGAGATGGATTTTTTGGGTTTGAGCTCTAAGGAGCCATTGGCTATGGTGAAAGAGGAGATTGACAACGATGGAGCACAAGATTCTGGGTATTTTAAAAGCTCTGGTGTTCCATGGTCCTCTAACAAGGCCTCTGCCCTTCCTCGTCTGATGCCTTTCAAGATTTCTGCAGAGGACAAGACTTCAAAGCTCGGTTCTGATCCAGTCGTGGCCACTTCGGATCAACGAAGAGGAGCCGAAATCCAGAAAACGTTCAATCACGATAGGCAAGGTGGTCCTCCTTTTTCCCTGGCAGCTTATCCTATGCAACCTGATTTGTATTCGATTCATCGTCCTCATGAAGCAAAACTATTTTCAGTTCAAAATCAAGGTATATCTGTTTCCTTAGGCAATCCATCCTTGAAGAACCCTTTTGCTCTTCCTGGTCAGATGGCTGGTTCTATCCTCAAACAACCACTTGGAGGAGTCCCTGTTTTGAGTGCTCCAAATTCGTTTTTTCCGCCATTTGGTTCCATTGTCGGGATAACTGAACCATGGAATGGCATGAAACCTACTGGTGGGTCCCCAAACCAATTGACTATTTTTTACGGCGGTACTGTCAACGTCTACAATGACATTACCCCTGAAAAGGTTCAGGCTATAATGTTCTTGGCTGGGGCTGGGGCTGCCATATCCAACATTGCACATCCAAAAGCTCCAGCTCATGGAATGGGTGCAAAAATGGCTGCAGCAAGTGATGCTGCTCCTGTGAACCAGTCCGTAAGCGCCTTGCCTTGCCCTGCTCTCTCTAGCCCCTTGTCTGTTTCTTCTCACACAGGTGCCCAGTCTGCGAGTGGGTCGAGCTGCACTGATGAGTTGAGAGGAGCTAAAACCAATGGAGTTCCCACAACTCCTATCAGCAAATTAGAGCCTCCAAGAATCAATCCGGTCGGATCTGTCACTGCTAGTGCTATGATGCCATCTGCTGTTCCACAGGCTCGTAAGGCATCCTTAGCTCGGTTTTTGGAGAAGCGCAAGGAGAGGGTAATGAGCTCTGCTCCATACAATCTTAGCAAGAAATATCCCGAGTGTGCTGCAACAGAATCCAACGGCGCAAATTTCTCGAGTCCTATCACAGGCAACAGCGCTAATGTGGCAAGCTAA 1143 47.86 MEMDFLGLSSKEPLAMVKEEIDNDGAQDSGYFKSSGVPWSSNKASALPRLMPFKISAEDKTSKLGSDPVVATSDQRRGAEIQKTFNHDRQGGPPFSLAAYPMQPDLYSIHRPHEAKLFSVQNQGISVSLGNPSLKNPFALPGQMAGSILKQPLGGVPVLSAPNSFFPPFGSIVGITEPWNGMKPTGGSPNQLTIFYGGTVNVYNDITPEKVQAIMFLAGAGAAISNIAHPKAPAHGMGAKMAAASDAAPVNQSVSALPCPALSSPLSVSSHTGAQSASGSSCTDELRGAKTNGVPTTPISKLEPPRINPVGSVTASAMMPSAVPQARKASLARFLEKRKERVMSSAPYNLSKKYPECAATESNGANFSSPITGNSANVAS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14258012 14261888 - Lsi04G011120.1 Lsi04g01112 661161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01112 380 MobiDBLite consensus disorder prediction 18 40 - -
Lsi04g01112 380 Pfam Jas motif 324 348 IPR018467 -
Lsi04g01112 380 MobiDBLite consensus disorder prediction 268 287 - -
Lsi04g01112 380 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 374 IPR040390 -
Lsi04g01112 380 PANTHER PROTEIN TIFY 7 13 374 - -
Lsi04g01112 380 SMART tify_2 185 220 IPR010399 -
Lsi04g01112 380 MobiDBLite consensus disorder prediction 361 380 - -
Lsi04g01112 380 Pfam tify domain 188 219 IPR010399 -
Lsi04g01112 380 MobiDBLite consensus disorder prediction 268 312 - -
Lsi04g01112 380 ProSiteProfiles Tify domain profile. 185 220 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01112 K13464 JAZ; jasmonate ZIM domain-containing protein - csv:101213109 682.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00245 Lsi-Chr2:2065077 Lsi04g01112 Lsi-Chr4:14258012 3.71E-35 dispersed
Lsi02g02884 Lsi-Chr2:35045283 Lsi04g01112 Lsi-Chr4:14258012 1.92E-09 dispersed
Lsi04g01112 Lsi-Chr4:14258012 Lsi06g00354 Lsi-Chr6:3869414 3.66E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g480 . . . . . Bpe10g00980 . . Cmo04g01093 . Cma04g01015 Cma04g00070 Car04g00951 Car04g00065 . . . Bhi07g00375 Tan04g1530 . Lac13g1371 Hepe01g0565 . . Cla07g00565 Cam07g0591 Cec07g0659 Cco07g0630 Clacu07g0595 Cmu07g0628 Cre07g0968 . Cone19ag0746 Cone6ag0376 Cone9ag0405 Lsi04g01112 . . . Blo06g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25181 PF06200 tify 3.00E-16 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01112 Lsi_Chr04 FPKM 124.415329 128.266037 245.629166 241.682083 34.967518 40.453415 35.409012 346.017975 337.89389 313.079224