Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01114 ATGGCCAGCGCGGGCGGTATTCCGGTGAACTCGGCAAATGGGTCCCCGTGGTCCAGCGGCCTCTGTGATTGCTTCTCCGACATGGGATCATGTTGTTGTACGATATGGTGTCCATGTGTGCCTTTTGGGCAAGCCTCAGAGATTATAGATGAAGGATCAACTTCCTGTTTTGGTAACGCATTAATTTTTTGGCTGATTGCTTCCTTTACGCCCTGCATTTGCCTTTACACTTGTTCTTACCGATCTCGATTGAGGGCAAAATACCAACTCCAAGAAACACCATGCAATGATTGTTGTGTTCACTTTTGGTGTTGGAGTTGTGCAATGTGTCAAGAGTATCGTGAGCTCAAGAGCCGCGGTTTTGACATGCATATTGGTTGGCAAGAAAATGTGCAAAGACGAAACAGGGGAATAGAGATCCCGCCTATAGTCGAGGGACAAATGAACCGTTGA 453 47.24 MASAGGIPVNSANGSPWSSGLCDCFSDMGSCCCTIWCPCVPFGQASEIIDEGSTSCFGNALIFWLIASFTPCICLYTCSYRSRLRAKYQLQETPCNDCCVHFWCWSCAMCQEYRELKSRGFDMHIGWQENVQRRNRGIEIPPIVEGQMNR 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14387628 14391933 - Lsi04G011140.1 Lsi04g01114 661163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01114 150 Pfam PLAC8 family 17 115 IPR006461 -
Lsi04g01114 150 PANTHER DUF614 FAMILY PROTEIN-RELATED 13 149 IPR006461 -
Lsi04g01114 150 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 16 117 IPR006461 -
Lsi04g01114 150 PANTHER PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED 13 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01114 - - - csv:101204367 285.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01114 Lsi-Chr4:14387628 Lsi05g00679 Lsi-Chr5:9026455 3.57E-24 dispersed
Lsi04g01114 Lsi-Chr4:14387628 Lsi04g01115 Lsi-Chr4:14460097 6.84E-88 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g475 . . . Bda11g00178 . . . . . . . . . . . . . Bhi07g00372 . . Lac13g1388 Hepe01g0561 . . . . . . . . . . . . . Lsi04g01114 . . . . Blo11g00972 . Bda11g00178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01114 Lsi_Chr04 FPKM 30.275728 30.183128 32.682228 29.239433 26.455957 26.060377 25.225107 29.378376 33.58231 29.896626