Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01120 ATGACTGAAGCTAAATTGTTGGCTCGTGTGCAGCACAGAAATGTCGTCAATTTGTTGGGGTACTGTGTGCATGGTTCAGAGAAACTACTGGTTTACGAATATGTCACGAATGAGAGCCTTGACAAGCTTCTATTTAAATCCAGCAGACGAGGAGAACTTGATTGGAAGAGGAGGTATGACATAATCTTTGGCGTAGCACGGGGGTTGCAATATCTTCATGTAGACTCACATAATGTCATTATCCATCGTGACATAAAGGCTAGTAACATTTTGTTGGATGATAAATGGGTCCCTAAGATTGCGGATTTTGGCATGGCTCGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGTGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCACGGGCATCTATCAGCAAAGGCAGATGTTTTTAGCTTTGGTGTTTTGGTTTTGGAACTTATAAGCGGCCAGCGAAATTCGTCATTTAGTTCATTTATGGACGCTGAGAATCTACTTGATTGGGCTTACAAGCTATACAAGAAGGGCAGGAGCTTGGAGATCATGGACCCAACATTAGCATCTTCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAGATAGGATTGCTCTGCACACAAGGCGATCCGCACCTACGGCCGACCATGCCACGTGTAGTTTTAATCCTTTCAAAGAGACCTGGTATTTTGGAGGAACCAACGAGACCGGGAATACCTGGGTCTCGGTATAGAAGATCTCGTAGGACAAGTGGATCCTCCTCCAATGCTGGAACTTCTGGTGCATCCGATTCCTATGCTTTGACGACCAATACTACTGGAACTATAACTGCTTCCGCAACTGCAACAGCAAACGAAGTTGCTTCTGGTTCTTCTTCAGTTAGTCGAGGATACGATACTCGTGGGAAACGTCCCATAGAAGGTTAG 942 44.59 MTEAKLLARVQHRNVVNLLGYCVHGSEKLLVYEYVTNESLDKLLFKSSRRGELDWKRRYDIIFGVARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSAKADVFSFGVLVLELISGQRNSSFSSFMDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDPHLRPTMPRVVLILSKRPGILEEPTRPGIPGSRYRRSRRTSGSSSNAGTSGASDSYALTTNTTGTITASATATANEVASGSSSVSRGYDTRGKRPIEG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14621727 14626835 + Lsi04G011200.1 Lsi04g01120 661169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01120 313 Pfam Protein tyrosine and serine/threonine kinase 1 226 IPR001245 GO:0004672|GO:0006468
Lsi04g01120 313 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 280 - -
Lsi04g01120 313 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01120 313 PANTHER RECEPTOR-LIKE KINASE 1 280 - -
Lsi04g01120 313 Gene3D Transferase(Phosphotransferase) domain 1 35 235 - -
Lsi04g01120 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Lsi04g01120 313 MobiDBLite consensus disorder prediction 285 313 - -
Lsi04g01120 313 MobiDBLite consensus disorder prediction 251 273 - -
Lsi04g01120 313 MobiDBLite consensus disorder prediction 285 303 - -
Lsi04g01120 313 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Lsi04g01120 313 SUPERFAMILY Protein kinase-like (PK-like) 2 241 IPR011009 -
Lsi04g01120 313 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01120 313 MobiDBLite consensus disorder prediction 237 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01120 Lsi-Chr4:14621727 Lsi02g00681 Lsi-Chr2:6103145 9.94E-87 dispersed
Lsi04g01120 Lsi-Chr4:14621727 Lsi02g00644 Lsi-Chr2:5766332 7.81E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83577 PF00069 Pkinase 5.30E-39 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01120 - - csv:101205738 544.273