Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01122 ATGGAGGACACGCACGTTGCTTTCGAATCCGCCCCTACAAATGAAGATCACGACGCCCCCATTTCTCACGCCCATGTTGACCATGGTTGGCAGAAGGTTACCTACGCTAAGCGCCAGAGGAAGACGGCCAAGCCCTCTACCGATGCTGTTTCCGGCAAGATCGTGTCTAATGGTACCGTTCCCGGCGCGGACAACGTTTTCCGCTCACTGGAGCAGAAATCGGAGGAGCGCCGCCGCCGAATTGCGGAGGCGCAGAAGGCGGCTGCTATTGACGACGATGAGGCTGTTCCGGTTAGATCGAAGATCAGGTCTGACGATGAGGATGGCGAGGACAGTGATGGAGAGGGTGCGGAGAATGGAAAACCTAACGAGGAGGCTAAGAAGGTGAAGCAGAAGAAACCGAAGAAGCCTAAGATTTCGGTGGCCGAGGCGGCTGCGAAGATCGATGTGAACGATCTGTTGGCGTTTTTGACCGATGTGTCGGGCTCGTACGAGACTCAGCAGGATATTCAGCTGATGAGGTTTGCGGATTATTTTGGTCGCGCATTCTCGGGCGTGAGCGCTTCTCAATTTCCGTGGGTGAAATTGTTTAGGGAGTCTCCGGTAGCTAAGATTGTTGATATCCCCCTCTCTCATATTTCTGAGGATGTTTATAAGGCATCAGTTGACTGGATTAATAAACGTTCTCTTGAGGCACTCAACTCTTTCGTTTTATGGTCTTTAGATAGCATTCTTGCTGACTTTGCGAGCCAACAAACTAATACCAAAGGCTCTAAAAAGGGAGTACAACATGCTTCGTCAAAATCTCAGGTACCATTGGTAGCATCACTCTTTGTTTGTCCGAAGTTTATGTGCATTGGGAGGGATAATGATGCATTGGTTTGTTCATATTGGGTGGCACAACCCACGTGTACTACTAATATTGTGAGGTTCAAGGTTGCCATATTTGTAGTCCTAGCAATGGTATTACGAAGAAAACCTGATATCTTAATTCACGTATTGCCAACAATAAGGGAAAACTCAAAGTATCAAGGACAGGATAAGCTTCCAGTACTTGTCTGGATGATAGTTCAGGCTTGTCAAGCAGATCTTGCAATAGGACTTCATGCATGGGCACATAACCTTTTGCCCATAGTTAGTGGTAGAAGTTGTAATCCCCAGTCTAGAGATCTAATTTTGCAGCTAGTGGAAAGAATTTTGTCCTCTCCAAAAGCTCGCACTATTCTAGTAAATGGTGCAGTCAGGAAGGGGGAGCGGTTGATTCCACCTTCTTCATTTGAAACACTTCTACGGGTTACTTTCCCTGCATCGTCAGCTAGAGTGAAGGCTACCGAAAGGTTTGAGGCTATCTATCCAACCTTGAAGGAGGTAGCACTTGCTGGCTCTCCTGGTAGTAGAGCAATGAAACAAGTTTCACAACAGATATTTAGTTTTGCTGCCAAAGCAGCAGGAGAAAGTGTTTCAGAGCTATCTAAAGAAGCAACTAATATTTTCATTTGGTGTTTGACTCAAAATGTTGATTGCTACAAGCAATGGGACAAGATTTATCAGGATAACCTAGAAGCTAGTGTCTCTGTTTTGAAAAAACTTTCTGATGACTGGAAAACGCATTCTCTAAAACTAGCTCCATTTGATGCTTTGAGAGAAACACTAAAAAGTTTCAGAATCAAGAATGAGAAGGCATTGGCTAGTGAGGAAGAGGACGGGCGCCAATCAATATACAAGGAGGCAGATAAGTACGCTAAGGCAATACTGAACAGGGTTTCACGAGGCCATGGATGCCTGAAAAGTATGGCTTTTATCGTCATTGCTCTAGGTATTGGCGCTGCAGTCATGTCCCCAAACATCGAGTCTTTGGATTGGGAGAAACTCACTGCTTTCATCCCACAAAACTCTTTCTGA 1902 45.74 MEDTHVAFESAPTNEDHDAPISHAHVDHGWQKVTYAKRQRKTAKPSTDAVSGKIVSNGTVPGADNVFRSLEQKSEERRRRIAEAQKAAAIDDDEAVPVRSKIRSDDEDGEDSDGEGAENGKPNEEAKKVKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVSGSYETQQDIQLMRFADYFGRAFSGVSASQFPWVKLFRESPVAKIVDIPLSHISEDVYKASVDWINKRSLEALNSFVLWSLDSILADFASQQTNTKGSKKGVQHASSKSQVPLVASLFVCPKFMCIGRDNDALVCSYWVAQPTCTTNIVRFKVAIFVVLAMVLRRKPDILIHVLPTIRENSKYQGQDKLPVLVWMIVQACQADLAIGLHAWAHNLLPIVSGRSCNPQSRDLILQLVERILSSPKARTILVNGAVRKGERLIPPSSFETLLRVTFPASSARVKATERFEAIYPTLKEVALAGSPGSRAMKQVSQQIFSFAAKAAGESVSELSKEATNIFIWCLTQNVDCYKQWDKIYQDNLEASVSVLKKLSDDWKTHSLKLAPFDALRETLKSFRIKNEKALASEEEDGRQSIYKEADKYAKAILNRVSRGHGCLKSMAFIVIALGIGAAVMSPNIESLDWEKLTAFIPQNSF 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14674875 14679985 - Lsi04G011220.1 Lsi04g01122 661171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01122 633 Coils Coil 67 87 - -
Lsi04g01122 633 PANTHER TRANSMEMBRANE PROTEIN 214 311 626 IPR019308 -
Lsi04g01122 633 PANTHER TRANSMEMBRANE PROTEIN 214-LIKE 311 626 - -
Lsi04g01122 633 MobiDBLite consensus disorder prediction 85 136 - -
Lsi04g01122 633 MobiDBLite consensus disorder prediction 1 64 - -
Lsi04g01122 633 Pfam TMEM214, C-terminal, caspase 4 activator 317 612 IPR019308 -
Lsi04g01122 633 PANTHER TRANSMEMBRANE PROTEIN 214-LIKE 15 276 - -
Lsi04g01122 633 MobiDBLite consensus disorder prediction 1 34 - -
Lsi04g01122 633 MobiDBLite consensus disorder prediction 85 107 - -
Lsi04g01122 633 PANTHER TRANSMEMBRANE PROTEIN 214 15 276 IPR019308 -
Lsi04g01122 633 MobiDBLite consensus disorder prediction 115 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01122 - - - csv:101205264 1016.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g456 . . . . . . . . Cmo04g01088 . Cma04g01010 Cma04g00064 Car04g00946 Car04g00061 Sed06g0178 . . Bhi07g00361 Tan04g1544 Cmetu10g1184 Lac13g1416 Hepe01g0553 . . Cla07g00573 Cam07g0600 Cec07g0669 Cco07g0640 Clacu07g0602 Cmu07g0639 Cre07g0975 . . . Cone9ag0416 Lsi04g01122 . . Cme10g01588 Blo06g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004619 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01122 Lsi_Chr04 FPKM 13.907067 14.557212 23.340202 25.047848 17.326468 17.912289 19.376686 11.476501 11.608971 11.448946